DESCRIPTION

Package: dgeAnalysis
Type: Package
Title: dgeAnalysis
Version: 1.5.2
Author@R:
  person("Tom", "Kuipers", email = "t.b.kuipers@lumc.nl", role = c("aut", "cre"))
Description:
    R shiny tool to perform differential gene expression and view the results interactively.
Depends: R (>= 4.1)
RoxygenNote: 7.2.1
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: 
    shiny (>= 1.7.2),
    shinydashboard (>= 0.7.2),
    shinyWidgets (>= 0.7.2),
    shinycssloaders (>= 1.0.0),
    shinyjs (>= 2.1.0),
    BiocManager (>= 1.30.18),
    knitr (>= 1.39),
    SummarizedExperiment (>= 1.24.0),
    edgeR (>= 3.36.0),
    limma (>= 3.50.3),
    DESeq2 (>= 1.34.0),
    tidyr (>= 1.2.0),
    scales (>= 1.2.0),
    broom (>= 1.0.0),
    plotly (>= 4.10.0),
    Rtsne (>= 0.16),
    rmarkdown (>= 2.14),
    gprofiler2 (>= 0.2.1),
    igraph (>= 1.3.4),
biocViews: Annotation, Clustering, GeneSetEnrichment, GO, KEGG,
    MultipleComparison, Pathways, Reactome, Visualization,
    Sequencing, RNASeq, GeneExpression, Transcription,
    Normalization, DifferentialExpression, Bayesian, Regression,
    PrincipalComponent, gProfiler, DGE, dgeAnalysis