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No_color for the example data #8
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hey, Xiao! |
No |
Hi guys! |
Hey, guys, I think it's because you set the λ the same for all the nodes, so there is no difference between min lambda and max lambda, so there is no colour. |
Thanks a lot!
Yes, you're right, I have figured it out.
But another question is coming followby that how to set the λ, I mean, how to set the λ between different species when I don't know the exact relationships of evolutionary rate.
At 2021-04-14 18:28:18, "wanghua1981" ***@***.***> wrote:
Hey, guys, I think it's because you set the λ the same for all the nodes, so there is no different between min lambda and max lambda, so there is no colour.
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there is a guide about how to estimate the λ between species in the cafe manual . |
Dear LKremer,
Thank you for this softeware, while when I run the example date, black and white figure output.
python ./CAFE_fig.py example_result.cafe -c Isoptera=zne,mna -pb 0.05 -pf 0.05 --dump test2/ -g .pdf --count_all_expansions
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