Running scripts

Running the kboolnet scripts

For local/manual installations

• Navigate to the directory containing the config file you want to run (e.g. cd ~/kboolnet_scripts/examples/CXCR4_toy)
• Run the desired script with Rscript: Rscript ~/kboolnet_scripts/VerifyModel.R VerifyModelConfig.R
  • replace ~/kboolnet_scripts/ with the directory where the scripts were installed during setupKboolnet()
  • replace VerifyModel.R with the desired script name
  • replace VerifyModelConfig.R with the config file you are running
• More details about usage are available on each script's wiki page
• Example rxncon models and configuration files for most scripts can be found in examples/ within the script install directory.

For Docker installations

• Navigate to the directory containing the config