A script to identify private alleles between populations/groups
Table of Contents
This script has been tested with python 3. The script requires the following files:
VCF file that you wish to identify private alleles from
A population file with each line having the format: individual population
- Output the list of private alleles (format: Chromosome, position, population, private allele count in population):
python PrivateAlleleIdentifier.v1.0.py -vcf file.vcf.gz -pop population.txt > PrivateAlleles.txt
help (and further explanations): python PrivateAlleleIdentifier.v1.0.py -h
Distributed under the MIT License.