From a8c6da9f1d54edd86ac1e0d1ac77b939f7d6a25c Mon Sep 17 00:00:00 2001 From: Keoni Gandall Date: Sat, 30 Mar 2024 08:46:28 -0700 Subject: [PATCH] add one libcurl --- .github/workflows/test.yml | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 29db041..46c3289 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -41,10 +41,10 @@ jobs: mkdir -p $HOME/bin cp ./minimap2-2.26_x64-linux/minimap2 $HOME/bin echo "$HOME/bin" >> $GITHUB_PATH - - name: Install dependencies for samtools + - name: Install dependencies for samtools and bcftools run: | sudo apt-get update - sudo apt-get install -y libncurses5-dev libbz2-dev liblzma-dev zlib1g-dev + sudo apt-get install -y libncurses5-dev libbz2-dev liblzma-dev zlib1g-dev libcurl4-openssl-dev - name: Download and install samtools run: | curl -L https://github.com/samtools/samtools/releases/download/1.13/samtools-1.13.tar.bz2 | tar -jxvf - @@ -55,7 +55,6 @@ jobs: echo "$HOME/samtools/bin" >> $GITHUB_PATH - name: Download and install bcftools run: | - sudo apt-get install -y libcurl4-gnutls-dev libcurl4-nss-dev libcurl4-openssl-dev git clone --recurse-submodules https://github.com/samtools/htslib.git git clone https://github.com/samtools/bcftools.git cd bcftools