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IJSEM phenotype db #180

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realmarcin opened this issue Jun 19, 2024 · 3 comments · May be fixed by #250
Open

IJSEM phenotype db #180

realmarcin opened this issue Jun 19, 2024 · 3 comments · May be fixed by #250

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@realmarcin
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@realmarcin
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@hrshdhgd

@hrshdhgd hrshdhgd linked a pull request Sep 17, 2024 that will close this issue
@hrshdhgd
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@realmarcin : What do you want to name this transform

@hrshdhgd
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hrshdhgd commented Sep 17, 2024

This is row 1 of the txt file. Give me the nodes and edges you see here. Please provide full example like it would look in a nodes or edges file. (full row with headers)

{
   "Habitat":"\"freshwater (river, lake, pond)\"",
   "IJSEM year":"2008",
   "article doi":"10.1099/ijs.0.65700-0",
   "16S rDNA accession number":"60.2",
   "DNA GC content (mol%)":"DQ987877",
   "oxygen preference":"aerobic",
   "mean length (microns)":"1.05",
   "mean width (microns)":"0.7",
   "motility":"\"motile, but unspecified structure\"",
   "spore production":"not indicated",
   "Metabolism assays":"\"catalase positive, H2S production, indole production, nitrate reduction to nitrite, oxidase positive\"",
   "Genus name":"Halorubrum",
   "species name":"luteum",
   "strain name":"CGSA15",
   "pH optimum for growth":"9.75",
   "pH range at which growth occurred":"7.5-10.5",
   "temperature optimum for growth (degC)":"35",
   "temperature range at which growth occurred (degC)":"17-41",
   "optimal NaCl concentration for growth (%)":"24.07",
   "NaCl concentration range at which growth occurred (%)":"14.5-30.16",
   "pigment production":"yes",
   "cell shape":"not indicated",
   "cell aggregation":"not indicated",
   "article first page":"1705",
   "culture collection codes":"CGMCC=1.6783|CECT=7303",
   "Sole carbon substrate use":"\"glucose, lactose, maltose, mannitol, mannose, sorbitol\"",
   "genome accession number":"",
   "gram status":"negative",
   "\"If \\'other\\' was chosen above, please enter a habitat below\"":"",
   "The paper included Biolog results":"No"
}

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