From db6c4e3d7897026bca76c639a8414b54e56819f8 Mon Sep 17 00:00:00 2001 From: Harshad Hegde Date: Mon, 16 Sep 2024 16:40:12 -0500 Subject: [PATCH] renamed transform name --- .../{traits => madin_etal}/edges.tsv | 386 +++++++++--------- .../{traits => madin_etal}/nodes.tsv | 156 +++---- 2 files changed, 271 insertions(+), 271 deletions(-) rename data/transformed/{traits => madin_etal}/edges.tsv (100%) rename data/transformed/{traits => madin_etal}/nodes.tsv (100%) diff --git a/data/transformed/traits/edges.tsv b/data/transformed/madin_etal/edges.tsv similarity index 100% rename from data/transformed/traits/edges.tsv rename to data/transformed/madin_etal/edges.tsv index b947456..24f7cdd 100644 --- a/data/transformed/traits/edges.tsv +++ b/data/transformed/madin_etal/edges.tsv @@ -3,409 +3,409 @@ CHEBI:14321 biolink:has_chemical_role CHEBI:78675 RO:0000087 CHEBI:15361 biolink:has_chemical_role CHEBI:23357 RO:0000087 CHEBI:15361 biolink:has_chemical_role CHEBI:78675 RO:0000087 CHEBI:15428 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CHEBI:75768 RO:0000087 CHEBI:53258 biolink:has_chemical_role CHEBI:35617 RO:0000087 CHEBI:53258 biolink:has_chemical_role CHEBI:50249 RO:0000087 CHEBI:53423 biolink:has_chemical_role CHEBI:38828 RO:0000087 @@ -417,10 +417,10 @@ CHEBI:59338 biolink:has_chemical_role CHEBI:77746 RO:0000087 CHEBI:9300 biolink:has_chemical_role CHEBI:77746 RO:0000087 ENVO:00000035 biolink:location_of NCBITaxon:425006 RO:0001015 ENVO:00000035 biolink:location_of NCBITaxon:466153 RO:0001015 -ENVO:00000035 biolink:location_of NCBITaxon:1123242 RO:0001015 ENVO:00000035 biolink:location_of NCBITaxon:358766 RO:0001015 -ENVO:00000035 biolink:location_of NCBITaxon:402880 RO:0001015 ENVO:00000035 biolink:location_of NCBITaxon:1094980 RO:0001015 +ENVO:00000035 biolink:location_of NCBITaxon:1123242 RO:0001015 +ENVO:00000035 biolink:location_of NCBITaxon:402880 RO:0001015 ENVO:00000035 biolink:location_of NCBITaxon:1609977 RO:0001015 ENVO:00000035 biolink:location_of NCBITaxon:339861 RO:0001015 ENVO:00000035 biolink:location_of NCBITaxon:225345 RO:0001015 diff --git a/data/transformed/traits/nodes.tsv b/data/transformed/madin_etal/nodes.tsv similarity index 100% rename from data/transformed/traits/nodes.tsv rename to data/transformed/madin_etal/nodes.tsv index 53438f2..24e1e5d 100644 --- a/data/transformed/traits/nodes.tsv +++ b/data/transformed/madin_etal/nodes.tsv @@ -1,99 +1,99 @@ id category name description xref provided_by synonym iri object predicate relation same_as subject subsets -CHEBI:25212 biolink:ChemicalRole metabolite +CHEBI:77965 biolink:ChemicalRole food anticaking agent +CHEBI:50505 biolink:ChemicalRole sweetening agent +CHEBI:15022 biolink:ChemicalRole electron donor +CHEBI:27780 biolink:ChemicalRole detergent +CHEBI:38500 biolink:ChemicalRole EC 1.9.3.1 (cytochrome c oxidase) inhibitor CHEBI:77881 biolink:ChemicalRole EC 4.3.1.15 (diaminopropionate ammonia-lyase) inhibitor -CHEBI:75771 biolink:ChemicalRole mouse metabolite +CHEBI:50733 biolink:ChemicalRole nutraceutical +CHEBI:78675 biolink:ChemicalRole fundamental metabolite +CHEBI:75768 biolink:ChemicalRole mammalian metabolite +CHEBI:64577 biolink:ChemicalRole flour treatment agent +CHEBI:50266 biolink:ChemicalRole prodrug +CHEBI:77966 biolink:ChemicalRole food stabiliser CHEBI:84735 biolink:ChemicalRole algal metabolite +CHEBI:27027 biolink:ChemicalRole micronutrient +CHEBI:76967 biolink:ChemicalRole human xenobiotic metabolite +CHEBI:35488 biolink:ChemicalRole central nervous system depressant +CHEBI:76946 biolink:ChemicalRole fungal metabolite +CHEBI:78016 biolink:ChemicalRole food gelling agent +CHEBI:77969 biolink:ChemicalRole food humectant +CHEBI:38867 biolink:ChemicalRole anaesthetic +CHEBI:50910 biolink:ChemicalRole neurotoxin +CHEBI:74783 biolink:ChemicalRole astringent CHEBI:76413 biolink:ChemicalRole greenhouse gas -CHEBI:48360 biolink:ChemicalRole amphiprotic solvent -CHEBI:173085 biolink:ChemicalRole ferroptosis inducer -CHEBI:64018 biolink:ChemicalRole protein kinase C agonist -CHEBI:35475 biolink:ChemicalRole non-steroidal anti-inflammatory drug -CHEBI:50905 biolink:ChemicalRole teratogenic agent -CHEBI:64763 biolink:ChemicalRole EC 3.1.4.11 (phosphoinositide phospholipase C) inhibitor -CHEBI:48219 biolink:ChemicalRole disinfectant -CHEBI:76507 biolink:ChemicalRole marine metabolite -CHEBI:78004 biolink:ChemicalRole food bulking agent CHEBI:62488 biolink:ChemicalRole signalling molecule -CHEBI:76964 biolink:ChemicalRole Penicillium metabolite -CHEBI:35679 biolink:ChemicalRole antilipemic drug -CHEBI:77941 biolink:ChemicalRole EC 3.5.1.4 (amidase) inhibitor +CHEBI:52214 biolink:ChemicalRole ligand +CHEBI:33282 biolink:ChemicalRole antibacterial agent +CHEBI:35469 biolink:ChemicalRole antidepressant +CHEBI:35617 biolink:ChemicalRole flavouring agent +CHEBI:60643 biolink:ChemicalRole NMDA receptor antagonist +CHEBI:48219 biolink:ChemicalRole disinfectant +CHEBI:49103 biolink:ChemicalRole drug metabolite +CHEBI:83056 biolink:ChemicalRole Daphnia magna metabolite +CHEBI:64763 biolink:ChemicalRole EC 3.1.4.11 (phosphoinositide phospholipase C) inhibitor +CHEBI:76924 biolink:ChemicalRole plant metabolite +CHEBI:76971 biolink:ChemicalRole Escherichia coli metabolite +CHEBI:91139 biolink:ChemicalRole elastin-laminin receptor agonist CHEBI:50406 biolink:ChemicalRole probe +CHEBI:77746 biolink:ChemicalRole human metabolite +CHEBI:25212 biolink:ChemicalRole metabolite +CHEBI:76976 biolink:ChemicalRole bacterial xenobiotic metabolite +CHEBI:76969 biolink:ChemicalRole bacterial metabolite +CHEBI:64049 biolink:ChemicalRole food acidity regulator +CHEBI:59174 biolink:ChemicalRole hapten +CHEBI:76507 biolink:ChemicalRole marine metabolite +CHEBI:75771 biolink:ChemicalRole mouse metabolite +CHEBI:131604 biolink:ChemicalRole Mycoplasma genitalium metabolite +CHEBI:38161 biolink:ChemicalRole chelator +CHEBI:59163 biolink:ChemicalRole biomarker +CHEBI:64571 biolink:ChemicalRole NMDA receptor agonist +CHEBI:48706 biolink:ChemicalRole antagonist +CHEBI:173085 biolink:ChemicalRole ferroptosis inducer CHEBI:35481 biolink:ChemicalRole non-narcotic analgesic -CHEBI:15022 biolink:ChemicalRole electron donor +CHEBI:35620 biolink:ChemicalRole vasodilator agent +CHEBI:48360 biolink:ChemicalRole amphiprotic solvent +CHEBI:23357 biolink:ChemicalRole cofactor +CHEBI:33287 biolink:ChemicalRole fertilizer CHEBI:35544 biolink:ChemicalRole EC 1.14.99.1 (prostaglandin-endoperoxide synthase) inhibitor -CHEBI:74783 biolink:ChemicalRole astringent -CHEBI:59163 biolink:ChemicalRole biomarker -CHEBI:77974 biolink:ChemicalRole food packaging gas -CHEBI:23366 biolink:ChemicalRole compatible osmolytes -CHEBI:38867 biolink:ChemicalRole anaesthetic -CHEBI:83056 biolink:ChemicalRole Daphnia magna metabolite -CHEBI:38828 biolink:ChemicalRole nonionic surfactant -CHEBI:25355 biolink:ChemicalRole mitochondrial respiratory-chain inhibitor +CHEBI:33284 biolink:ChemicalRole nutrient CHEBI:48354 biolink:ChemicalRole polar solvent -CHEBI:25728 biolink:ChemicalRole osmolyte -CHEBI:50183 biolink:ChemicalRole P450 inhibitor CHEBI:22586 biolink:ChemicalRole antioxidant -CHEBI:76969 biolink:ChemicalRole bacterial metabolite -CHEBI:131604 biolink:ChemicalRole Mycoplasma genitalium metabolite -CHEBI:38161 biolink:ChemicalRole chelator -CHEBI:52214 biolink:ChemicalRole ligand +CHEBI:35679 biolink:ChemicalRole antilipemic drug +CHEBI:62868 biolink:ChemicalRole hepatoprotective agent +CHEBI:23366 biolink:ChemicalRole compatible osmolytes +CHEBI:75772 biolink:ChemicalRole Saccharomyces cerevisiae metabolite +CHEBI:48356 biolink:ChemicalRole protic solvent +CHEBI:25728 biolink:ChemicalRole osmolyte +CHEBI:35493 biolink:ChemicalRole antipyretic +CHEBI:76964 biolink:ChemicalRole Penicillium metabolite +CHEBI:25512 biolink:ChemicalRole neurotransmitter CHEBI:39456 biolink:ChemicalRole antiglaucoma drug +CHEBI:50504 biolink:ChemicalRole osmotic diuretic +CHEBI:38828 biolink:ChemicalRole nonionic surfactant +CHEBI:35475 biolink:ChemicalRole non-steroidal anti-inflammatory drug +CHEBI:64018 biolink:ChemicalRole protein kinase C agonist +CHEBI:176497 biolink:ChemicalRole geroprotector +CHEBI:77941 biolink:ChemicalRole EC 3.5.1.4 (amidase) inhibitor CHEBI:33292 biolink:ChemicalRole fuel -CHEBI:66980 biolink:ChemicalRole nootropic agent -CHEBI:64577 biolink:ChemicalRole flour treatment agent -CHEBI:62868 biolink:ChemicalRole hepatoprotective agent -CHEBI:77966 biolink:ChemicalRole food stabiliser -CHEBI:50505 biolink:ChemicalRole sweetening agent -CHEBI:23357 biolink:ChemicalRole cofactor -CHEBI:50733 biolink:ChemicalRole nutraceutical -CHEBI:27027 biolink:ChemicalRole micronutrient -CHEBI:78016 biolink:ChemicalRole food gelling agent +CHEBI:77974 biolink:ChemicalRole food packaging gas CHEBI:64570 biolink:ChemicalRole EC 2.1.2.1 (glycine hydroxymethyltransferase) inhibitor -CHEBI:35620 biolink:ChemicalRole vasodilator agent -CHEBI:49103 biolink:ChemicalRole drug metabolite -CHEBI:35617 biolink:ChemicalRole flavouring agent -CHEBI:91139 biolink:ChemicalRole elastin-laminin receptor agonist -CHEBI:78433 biolink:ChemicalRole refrigerant -CHEBI:27780 biolink:ChemicalRole detergent -CHEBI:38500 biolink:ChemicalRole EC 1.9.3.1 (cytochrome c oxidase) inhibitor -CHEBI:77969 biolink:ChemicalRole food humectant -CHEBI:64049 biolink:ChemicalRole food acidity regulator -CHEBI:59174 biolink:ChemicalRole hapten -CHEBI:33287 biolink:ChemicalRole fertilizer -CHEBI:48706 biolink:ChemicalRole antagonist -CHEBI:50910 biolink:ChemicalRole neurotoxin -CHEBI:35488 biolink:ChemicalRole central nervous system depressant -CHEBI:77970 biolink:ChemicalRole food thickening agent -CHEBI:60643 biolink:ChemicalRole NMDA receptor antagonist -CHEBI:77965 biolink:ChemicalRole food anticaking agent -CHEBI:35469 biolink:ChemicalRole antidepressant -CHEBI:176497 biolink:ChemicalRole geroprotector -CHEBI:76967 biolink:ChemicalRole human xenobiotic metabolite -CHEBI:64571 biolink:ChemicalRole NMDA receptor agonist -CHEBI:48218 biolink:ChemicalRole antiseptic drug -CHEBI:76971 biolink:ChemicalRole Escherichia coli metabolite -CHEBI:33282 biolink:ChemicalRole antibacterial agent +CHEBI:50905 biolink:ChemicalRole teratogenic agent +CHEBI:66980 biolink:ChemicalRole nootropic agent +CHEBI:78004 biolink:ChemicalRole food bulking agent CHEBI:63332 biolink:ChemicalRole EC 3.1.3.1 (alkaline phosphatase) inhibitor -CHEBI:75772 biolink:ChemicalRole Saccharomyces cerevisiae metabolite -CHEBI:33284 biolink:ChemicalRole nutrient -CHEBI:76946 biolink:ChemicalRole fungal metabolite -CHEBI:46787 biolink:ChemicalRole solvent CHEBI:23240 biolink:ChemicalRole chromophore -CHEBI:50504 biolink:ChemicalRole osmotic diuretic +CHEBI:50904 biolink:ChemicalRole allergen CHEBI:50249 biolink:ChemicalRole anticoagulant +CHEBI:77970 biolink:ChemicalRole food thickening agent CHEBI:27314 biolink:ChemicalRole water-soluble vitamin (role) -CHEBI:25512 biolink:ChemicalRole neurotransmitter -CHEBI:75768 biolink:ChemicalRole mammalian metabolite -CHEBI:77746 biolink:ChemicalRole human metabolite -CHEBI:76976 biolink:ChemicalRole bacterial xenobiotic metabolite -CHEBI:78675 biolink:ChemicalRole fundamental metabolite -CHEBI:53000 biolink:ChemicalRole epitope -CHEBI:50904 biolink:ChemicalRole allergen -CHEBI:50266 biolink:ChemicalRole prodrug CHEBI:78017 biolink:ChemicalRole food propellant -CHEBI:35493 biolink:ChemicalRole antipyretic -CHEBI:76924 biolink:ChemicalRole plant metabolite -CHEBI:48356 biolink:ChemicalRole protic solvent +CHEBI:25355 biolink:ChemicalRole mitochondrial respiratory-chain inhibitor +CHEBI:53000 biolink:ChemicalRole epitope +CHEBI:48218 biolink:ChemicalRole antiseptic drug +CHEBI:46787 biolink:ChemicalRole solvent +CHEBI:78433 biolink:ChemicalRole refrigerant +CHEBI:50183 biolink:ChemicalRole P450 inhibitor pathways:nitrate_reduction biolink:BiologicalProcess nitrate_reduction NCBITaxon:54261 biolink:OrganismTaxon Ferroglobus placidus NCBITaxon:2714 biolink:OrganismTaxon Aquifex pyrophilus