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MemoryError #347

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4 of 6 tasks
wkkdmx opened this issue Sep 12, 2024 · 0 comments
Open
4 of 6 tasks

MemoryError #347

wkkdmx opened this issue Sep 12, 2024 · 0 comments

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@wkkdmx
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wkkdmx commented Sep 12, 2024

First check

  • I used the GitHub search to find a similar issue and didn't find it.
  • I searched GetOrganelle.wiki context, especially the FAQ and browsed the examples to confirm it is unexpected to happen.
  • I have updated GetOrganelle to the latest version GitHub release

Describe the bug
金老师,您好。我在使用get_organelle_from_reads.py 组装叶绿体基因组时出现MemoryError,组装命令中使用了--memory-save --out-per-round -P 0 --remove-duplicates 0 参数。组装过程(Extending ...)中在内存占用达到200G左右时出现MemoryError, 但是机器的内存有512G,getorangelle内存占用大约40%。不清楚这是什么情况,感谢老师解惑。

To Reproduce
get_org.log.txt

  • COMMAND
  • complete get_org.log.txt file (required in most cases) and/or other log files
  • GetOrganelle version if get_org.log.txt does not exist

Additional context
Add any other context about the problem here.

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