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something went wrong when using -F anonym without --target-genome-size #337

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sixpoints opened this issue Jun 7, 2024 · 0 comments

sixpoints commented Jun 7, 2024

GetOrganelle v1.7.7.1

When I run get_organelle_from_reads.py according to the tutorial example,if I use -F anonym, it will not run and report an error:

get_organelle_from_reads.py", line 843, in get_options
    ref_seqs = read_fasta(options.genes_fasta[go_t])[1]
IndexError: list index out of range

It can only run normally when --target-genome-size is defined, and it works normally when -F embplant_pt.

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