job.msub

#!/bin/bash -l
#BSUB -L /bin/bash       # script shell language (/bin/tcsh, /bin/ksh etc.) NOTE: this cause problem on SHAO cluster of missing libimf.so
#BSUB -n 12               # number of cores required
#BSUB -M 10000             #in MB
#BSUB -J scan               # name of job
#BSUB -o Log.%J    # log file for standard output
#BSUB -e Log.%J     # log file for standard error
#BSUB -q cosma
#BSUB -P durham             #project to charge time; durham or dp004
#BSUB -x
#BSUB -R "span[ptile=12]"     # number of processors to use per node
##BSUB -R "model=SandyBridge"
#ulimit -s unlimited

#~ source /etc/profile.d/modules.csh
module purge
module load intel_comp/c4/2013.1.046 gsl/1.16 platform_mpi/9.1.2 hdf5/1.8.12 python
#module load intel_comp/c4/2013.0.028 platform_mpi hdf5 gsl/1.15 python

# python MCMCgen.py 20
# python mockFmin.py

export OMP_NUM_THREADS=12
halo=$1 #
cleansample=$2
usetemplate=$3
useweight=$4
scancontour=$5
proxy=$6
percent=$7
python scanStarDup.py $halo #$cleansample $usetemplate $useweight $scancontour $proxy $percent