get-sari-data.yml

name: "get-sari-data"
on:
  workflow_dispatch:
  schedule:
    - cron: "0 10,13,23 * * 4"   
  

jobs:
  get-sari-data:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@main
    
    - name: Setup Python
      uses: actions/setup-python@v4
      with:
        python-version: '3.x'

    - name: Install requirements
      run: |
        pip install pandas requests pathlib epiweeks
        
    - name: Get data
      run:  |
       cd ./code
       python3 ./get_sari.py     
        
    - name: Commit files
      env:
        AUTH: ${{ secrets.GITHUB_TOKEN }}
      run: |
        git config --local user.email "action@github.com"
        git config --local user.name "GitHub Action"
        git remote rm origin
        git remote add origin https://${AUTH}@github.com/KITmetricslab/RESPINOW-Data.git > /dev/null 2>&1
        git pull origin main
        git add --all data/SARI/
        git commit --allow-empty -m "Update SARI data"
        
    - name: Push changes
      run: |
        git push --quiet --set-upstream origin HEAD:main
        echo "pushed to github"