v0.13.7

HDF5 v0.13.7

Diff since v0.13.6

Merged pull requests:

• Restrict HDF5_jll to v1.10 series (#743) (@jmert)

v0.14.1

HDF5 v0.14.1

Diff since v0.14.0

Closed issues:

• setindex! deprecation conflicts with Base.setindex! (#737)

Merged pull requests:

• Fix #737, extend Base.setindex! in deprectation (#738) (@jmert)

v0.14.0

HDF5 v0.14.0

Diff since v0.13.6

Closed issues:

• adding h5e_get_auto wrapper for error handling manipulation (#150)
• build error on Debian/Ubuntu (#447)
• Remove or update S<:String (#453)
• HDF5Attributes should support keys() (#554)
• define keys instead of (or as well as) names (#590)
• Build error: signal (7) (#608)
• h5write will create file and dataset even if write fails (#618)
• Reading matrix of strings produced in python are incomprehensible (#628)
• File organization and renaming? (#653)
• Testing impact to downstream packages (#661)
• mpio.jl test (in #master) fails with "Attempting to use an MPI routine before initializing MPICH" at NERSC (#665)
• v0.14 release tracker (#666)
• Regression in typed read (#669)
• Printing of closed datatype throws error (#671)
• Parallel HDF5 is broken by commit d1e542a (#683)
• PyCall - HDF5 clash: load ordering (#702)
• Inconsistent writing and loading of 0x0 matrix (#705)
• Add support for the HDF5 dimension scale functionality (#716)
• Removing exists() for Base.haskey() is a breaking change (#721)
• Non-deterministic error: HDF5 is not properly installed. (#734)

Merged pull requests:

• Add deprecations to aid in next major revision transition (#657) (@jmert)
• Fix getter function for [hypothetical] getindex(apl::HDF5Properties, :alignment) (#659) (@jmert)
• Add convenient get_access_properties() functions (#660) (@jmert)
• MAT.jl and JLD.jl downstream integration testing (#662) (#662) (@musm)
• Explicitly generate ccall wrapper functions (#664) (@jmert)
• Wrap H5Pset_chunk_cache and related constants (#667) (@musm)
• Wrap h5p_set_virtual funciton (#668) (@musm)
• Allow no-error case in binding generator and add error checking of Ptr returns (#670) (@jmert)
• Fix typos in show() and test custom printing (#672) (@jmert)
• Clean up blosc filter api usage (#673) (@musm)
• Replace deprecated Pkg usage (#674) (@musm)
• More robust tests and cleanup (#675) (@musm)
• fix dtype printing for closed datatypes (#676) (@kleinhenz)
• Wrap more of the HDF5 API with generated bindings (#677) (@jmert)
• Rename HDF5 constants to C definitions for consistency (#678) (@musm)
• Fix the flaky CRC32 test through actually setting the track_times property (#679) (@jmert)
• Rename constant reading and use api for hdf5 lib version (#680) (@musm)
• Speed up (pre)compile and load times (#681) (@jmert)
• Fix #683, MPI properties (#684) (@jmert)
• Define getindex for properties and rearrange low-level API helpers (#685) (@jmert)
• Re-add read(dset, String) form (#686) (@jmert)
• Fixup spacing indentation to make them more consistent (#687) (@musm)
• Separate types required for low-level API from high-level functionality (#688) (@jmert)
• Separate the low-level reference buffer from the high-level wrapper (#689) (@jmert)
• Rename public exports to exclude HDF5 prefix (#690) (@musm)
• Add default null reference constructor (#691) (@jmert)
• An assortment of minor changes (#692) (@jmert)
• Remove HDF5 prefix from internal constants and formatting fixes (#693) (@musm)
• Fix rename by removing has exported binding to haskey (#694) (@musm)
• Remove HDF5 prefix from HDF5Opaque (#695) (@musm)
• Fix straggling uses of HDF5Opaque (#696) (@jmert)
• Do not export all bindings when deprecating (#697) (@jmert)
• Change names -> keys to better align with dict-like interface (#698) (@musm)
• Rename public functions and stop exporting several public API methods (#699) (@musm)
• Update docs to reflect recent function renames (#700) (@musm)
• Remove deprecated function (#701) (@musm)
• Fix deprecation of names() (#704) (@jmert)
• Fix #705, distinguishing 0-size and null arrays (#706) (@jmert)
• Explicitly define (d|a)_(write|create) (#707) (@musm)
• Fix #618, treat create-write operation as transaction (#708) (@jmert)
• Auto-generated list of library bindings for docs (#709) (@jmert)
• Improve interface to permit AbstractString (#710) (@musm)
• Use explicit extension of Base functions instead of manual imports (#711) (@musm)
• Fixup cleanup function for a_write (#712) (@musm)
• Cleanup id usage and unmacrofiy close functions (#713) (@musm)
• Cleanup id usage plus misc. house cleaning (#714) (@musm)
• Add specialized show for HDF5 properties (#715) (@jmert)
• Add support for dimension scales API bindings (#717) (@fergu)
• Fix a few ambiguities (#718) (@jmert)
• Replace vlenpack with cconvert (#719) (@jmert)
• Have deprecated exists export itself (#722) (@jmert)
• Move low-level method specializations to the middle-level API (#723) (@jmert)
• Grab bag of cleaning up (#724) (@musm)
• 3-arg show with hiearchical tree printing (#725) (@jmert)
• Update TagBot.yml (#728) (@musm)
• Stop testing on Travis and Appveyor (#729) (@musm)
• Remove the repeated Github event name from CI (#730) (@musm)
• remove hdf5_to_julia (#732) (@kleinhenz)
• Wrap all tests in a testset (#733) (@musm)
• Bump version to v0.14 (#735) (@musm)

v0.13.6

HDF5 v0.13.6

Diff since v0.13.5

Closed issues:

• 2.2x h5d_read slowdown in v >= 0.12.4 (#609)
• d_write() returns nothing type (#623)
• Type size mismatch when reading compound datatype (#634)
• Ambiguity when using write to write mutiple variables (#654)

Merged pull requests:

• Lazy-load MPI using Requires (#622) (@jipolanco)
• RFC: use keyword args for setting properties (#632) (@kleinhenz)
• Fix support for reading more deeply nested types (#642) (@kleinhenz)
• fix return type of h5g_get_objname_by_idx (#643) (@kleinhenz)
• Fix error condition in unmappable data sets and add test (#644) (@jmert)
• Add ability to set dataset create-time allocation policy (#645) (@jmert)
• Update GitHub actions (#647) (@musm)
• Update gh actions to skip x86 on MacOS (#648) (@musm)
• Misc minor improvements (#649) (@musm)
• use h5lt_dtype_to_text for showing HDF5Datatype (#650) (@kleinhenz)
• Fix passing properties in read and h5read (#651) (@jipolanco)
• Add deprecated bindings for backwards compatibility with ecosystem packages (#655) (@jmert)
• Backport #645: Add ability to set dataset create-time allocation policy (#656) (@jmert)

v0.13.5

HDF5 v0.13.5

Diff since v0.13.4

Merged pull requests:

• give an example of setting JULIA_HDF5_LIBRARY_PATH (#633) (@ranocha)
• Formatting fixes (#635) (@musm)
• Update actions and CI (#637) (@musm)
• Update doc directory (#638) (@musm)
• Remove unnecessary step (#639) (@musm)
• Migrate existing documentation to Documenter (#640) (@musm)
• Clean up README.md (#641) (@musm)

v0.13.4

HDF5 v0.13.4

Diff since v0.13.3

Closed issues:

• JLD 0.0 reader should convert data to field type (#205)
• Cannot load variables in v0.4 that load fine in v0.3 (#212)
• Memory leak when reading many different objects (#349)
• Can't build on macOS 10.13.4 (#482)
• Memory leak with arrays in conjuciton with HDF5 (#537)
• write(fh,"A",A,"B",B) fails on 1.3.0 (#599)

Merged pull requests:

• fix method ambiguity error (#631) (@kleinhenz)

v0.13.3

HDF5 v0.13.3

Diff since v0.13.2

Closed issues:

• Memory leak caused by setting properties like "chunk" (#630)

Merged pull requests:

• Fix property memory leak (#629) (@MarkusSchildhauer)

v0.13.2

HDF5 v0.13.2

Diff since v0.13.1

Closed issues:

• h5_close and property lists in h5open (#620)

Merged pull requests:

• alignment (#616) (@AStupidBear)
• Check that HDF5Properties is valid before closing (#621) (@jipolanco)
• CompatHelper: bump compat for "Blosc" to "0.7" (#624) (@github-actions[bot])

v0.13.1

HDF5 v0.13.1

Diff since v0.13.0

Closed issues:

• Not yet supported (#379)
• Tag 0.13.0 release (given master is 0.13.0) ? (#610)

Merged pull requests:

• CompatHelper: bump compat for "Blosc" to "0.6" (#613) (@github-actions[bot])
• unpad fixed length strings in compound datatypes (#614) (@kleinhenz)

v0.13.0

HDF5 v0.13.0

Diff since v0.12.5

Closed issues:

• Performance issue reading HDF5Compound data (#408)
• Julia 1.3 threaded writing segfaults (#564)
• How to read many files which are in the same folder? (#593)
• Use HDF5_jll.jl (#594)
• MPI support and HDF5_jll (#606)

Merged pull requests:

• improve performance/ergonomics of reading compound datatypes (#592) (@kleinhenz)
• Add compatibility bounds (#595) (@musm)
• CompatHelper: add new compat entry for "BinaryProvider" at version "0.5" (#597) (@github-actions[bot])
• Use HDF5_jll (#602) (@musm)
• getindex returns arrays with correct dims, or scalars (#603) (@rafaqz)
• Create .codecov.yml (#604) (@musm)
• add Array constructor for HDF5Dataset (#605) (@rafaqz)
• Add option to bypass HDF5_jll (#607) (@jipolanco)
• Install TagBot as a GitHub Action (#611) (@JuliaTagBot)