packages.bib

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2021},
  url = {https://www.R-project.org/},
}

@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2020},
  note = {R package version 0.21},
  url = {https://CRAN.R-project.org/package=bookdown},
}

@Manual{R-cli,
  title = {cli: Helpers for Developing Command Line Interfaces},
  author = {Gábor Csárdi},
  year = {2021},
  note = {R package version 2.4.0},
  url = {https://CRAN.R-project.org/package=cli},
}

@Manual{R-crosstalk,
  title = {crosstalk: Inter-Widget Interactivity for HTML Widgets},
  author = {Joe Cheng},
  year = {2016},
  note = {R package version 1.0.0},
  url = {https://CRAN.R-project.org/package=crosstalk},
}

@Manual{R-devtools,
  title = {devtools: Tools to Make Developing R Packages Easier},
  author = {Hadley Wickham and Jim Hester and Winston Chang},
  year = {2020},
  note = {R package version 2.3.2},
  url = {https://CRAN.R-project.org/package=devtools},
}

@Manual{R-DiagrammeRsvg,
  title = {DiagrammeRsvg: Export DiagrammeR Graphviz Graphs as SVG},
  author = {Richard Iannone},
  year = {2016},
  note = {R package version 0.1},
  url = {https://github.com/rich-iannone/DiagrammeRsvg},
}

@Manual{R-drake,
  title = {drake: A Pipeline Toolkit for Reproducible Computation at Scale},
  author = {William Michael Landau},
  year = {2021},
  note = {R package version 7.13.1},
  url = {https://CRAN.R-project.org/package=drake},
}

@Manual{R-DT,
  title = {DT: A Wrapper of the JavaScript Library 'DataTables'},
  author = {Yihui Xie and Joe Cheng and Xianying Tan},
  year = {2020},
  note = {R package version 0.16},
  url = {https://CRAN.R-project.org/package=DT},
}

@Manual{R-echarts4r,
  title = {echarts4r: Create Interactive Graphs with 'Echarts JavaScript' Version 5},
  author = {John Coene},
  year = {2021},
  note = {https://echarts4r.john-coene.com/,
https://github.com/JohnCoene/echarts4r},
}

@Manual{R-flexdashboard,
  title = {flexdashboard: R Markdown Format for Flexible Dashboards},
  author = {Richard Iannone and JJ Allaire and Barbara Borges},
  year = {2020},
  note = {R package version 0.5.2},
  url = {https://CRAN.R-project.org/package=flexdashboard},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington},
  year = {2020},
  note = {R package version 3.3.2},
  url = {https://CRAN.R-project.org/package=ggplot2},
}

@Manual{R-golem,
  title = {golem: A Framework for Robust Shiny Applications},
  author = {Vincent Guyader and Colin Fay and Sébastien Rochette and Cervan Girard},
  year = {2020},
  note = {R package version 0.2.1},
  url = {https://CRAN.R-project.org/package=golem},
}

@Manual{R-highcharter,
  title = {highcharter: A Wrapper for the 'Highcharts' Library},
  author = {Joshua Kunst},
  year = {2020},
  note = {R package version 0.8.2},
  url = {https://CRAN.R-project.org/package=highcharter},
}

@Manual{R-htmltools,
  title = {htmltools: Tools for HTML},
  author = {Joe Cheng and Carson Sievert and Winston Chang and Yihui Xie and Jeff Allen},
  year = {2021},
  note = {R package version 0.5.1.9000},
  url = {https://github.com/rstudio/htmltools},
}

@Manual{R-htmlwidgets,
  title = {htmlwidgets: HTML Widgets for R},
  author = {Ramnath Vaidyanathan and Yihui Xie and JJ Allaire and Joe Cheng and Carson Sievert and Kenton Russell},
  year = {2020},
  note = {R package version 1.5.3},
  url = {https://CRAN.R-project.org/package=htmlwidgets},
}

@Manual{R-httpuv,
  title = {httpuv: HTTP and WebSocket Server Library},
  author = {Joe Cheng and Winston Chang},
  year = {2021},
  note = {R package version 1.5.5},
  url = {https://CRAN.R-project.org/package=httpuv},
}

@Manual{R-jsonify,
  title = {jsonify: Convert Between 'R' Objects and Javascript Object Notation
(JSON)},
  author = {David Cooley},
  year = {2020},
  note = {R package version 1.2.1},
  url = {https://CRAN.R-project.org/package=jsonify},
}

@Manual{R-jsonlite,
  title = {jsonlite: A Simple and Robust JSON Parser and Generator for R},
  author = {Jeroen Ooms},
  year = {2020},
  note = {R package version 1.7.2},
  url = {https://CRAN.R-project.org/package=jsonlite},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2020},
  note = {R package version 1.29},
  url = {https://CRAN.R-project.org/package=knitr},
}

@Manual{R-magrittr,
  title = {magrittr: A Forward-Pipe Operator for R},
  author = {Stefan Milton Bache and Hadley Wickham},
  year = {2020},
  note = {R package version 2.0.1},
  url = {https://CRAN.R-project.org/package=magrittr},
}

@Manual{R-packer,
  title = {packer: An Opinionated Framework for Using 'JavaScript'},
  author = {John Coene},
  year = {2020},
  note = {https://github.com/JohnCoene/packer, https://packer.john-coene.com},
}

@Manual{R-packrat,
  title = {packrat: A Dependency Management System for Projects and their R Package
Dependencies},
  author = {Kevin Ushey and Jonathan McPherson and Joe Cheng and Aron Atkins and JJ Allaire},
  year = {2018},
  note = {R package version 0.5.0},
  url = {https://CRAN.R-project.org/package=packrat},
}

@Manual{R-plotly,
  title = {plotly: Create Interactive Web Graphics via 'plotly.js'},
  author = {Carson Sievert and Chris Parmer and Toby Hocking and Scott Chamberlain and Karthik Ram and Marianne Corvellec and Pedro Despouy},
  year = {2021},
  note = {R package version 4.9.3},
  url = {https://CRAN.R-project.org/package=plotly},
}

@Manual{R-purrr,
  title = {purrr: Functional Programming Tools},
  author = {Lionel Henry and Hadley Wickham},
  year = {2020},
  note = {R package version 0.3.4},
  url = {https://CRAN.R-project.org/package=purrr},
}

@Manual{R-r2d3,
  title = {r2d3: Interface to 'D3' Visualizations},
  author = {Nick Strayer and Javier Luraschi and JJ Allaire},
  year = {2020},
  note = {R package version 0.2.5},
  url = {https://CRAN.R-project.org/package=r2d3},
}

@Manual{R-R6,
  title = {R6: Encapsulated Classes with Reference Semantics},
  author = {Winston Chang},
  year = {2020},
  note = {R package version 2.5.0},
  url = {https://CRAN.R-project.org/package=R6},
}

@Manual{R-rCharts,
  title = {rCharts: Interactive Charts using Javascript Visualization Libraries},
  author = {Ramnath Vaidyanathan},
  year = {2013},
  note = {R package version 0.4.5},
}

@Manual{R-reactable,
  title = {reactable: Interactive Data Tables Based on 'React Table'},
  author = {Greg Lin},
  year = {2020},
  note = {R package version 0.2.3},
  url = {https://CRAN.R-project.org/package=reactable},
}

@Manual{R-reactR,
  title = {reactR: React Helpers},
  author = {Facebook Inc and Michel Weststrate and Kent Russell and Alan Dipert},
  year = {2020},
  note = {R package version 0.4.3},
  url = {https://github.com/react-R/reactR},
}

@Manual{R-remotes,
  title = {remotes: R Package Installation from Remote Repositories, Including
'GitHub'},
  author = {Jim Hester and Gábor Csárdi and Hadley Wickham and Winston Chang and Martin Morgan and Dan Tenenbaum},
  year = {2020},
  note = {R package version 2.2.0},
  url = {https://CRAN.R-project.org/package=remotes},
}

@Manual{R-renv,
  title = {renv: Project Environments},
  author = {Kevin Ushey},
  year = {2020},
  note = {R package version 0.9.3},
  url = {https://CRAN.R-project.org/package=renv},
}

@Manual{R-reticulate,
  title = {reticulate: Interface to 'Python'},
  author = {Kevin Ushey and JJ Allaire and Yuan Tang},
  year = {2020},
  note = {R package version 1.18},
  url = {https://CRAN.R-project.org/package=reticulate},
}

@Manual{R-rmapshaper,
  title = {rmapshaper: Client for 'mapshaper' for 'Geospatial' Operations},
  author = {Andy Teucher and Kenton Russell},
  year = {2020},
  note = {R package version 0.4.4},
  url = {https://CRAN.R-project.org/package=rmapshaper},
}

@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2021},
  note = {R package version 2.7},
  url = {https://CRAN.R-project.org/package=rmarkdown},
}

@Manual{R-roxygen2,
  title = {roxygen2: In-Line Documentation for R},
  author = {Hadley Wickham and Peter Danenberg and Gábor Csárdi and Manuel Eugster},
  year = {2020},
  note = {R package version 7.1.1},
  url = {https://CRAN.R-project.org/package=roxygen2},
}

@Manual{R-shiny,
  title = {shiny: Web Application Framework for R},
  author = {Winston Chang and Joe Cheng and JJ Allaire and Carson Sievert and Barret Schloerke and Yihui Xie and Jeff Allen and Jonathan McPherson and Alan Dipert and Barbara Borges},
  note = {R package version 1.5.0.9005},
  url = {http://shiny.rstudio.com},
  year = {2021},
}

@Manual{R-shinydashboard,
  title = {shinydashboard: Create Dashboards with 'Shiny'},
  author = {Winston Chang and Barbara {Borges Ribeiro}},
  year = {2018},
  note = {R package version 0.7.1},
  url = {https://CRAN.R-project.org/package=shinydashboard},
}

@Manual{R-shinyjs,
  title = {shinyjs: Easily Improve the User Experience of Your Shiny Apps in Seconds},
  author = {Dean Attali},
  year = {2020},
  note = {R package version 1.1},
  url = {https://CRAN.R-project.org/package=shinyjs},
}

@Manual{R-sparkline,
  title = {sparkline: 'jQuery' Sparkline 'htmlwidget'},
  author = {Ramnath Vaidyanathan and Kent Russell and Gareth Watts},
  year = {2016},
  note = {R package version 2.0},
  url = {https://CRAN.R-project.org/package=sparkline},
}

@Manual{R-stringr,
  title = {stringr: Simple, Consistent Wrappers for Common String Operations},
  author = {Hadley Wickham},
  year = {2019},
  note = {R package version 1.4.0},
  url = {https://CRAN.R-project.org/package=stringr},
}

@Manual{R-targets,
  title = {targets: Dynamic Function-Oriented 'Make'-Like Declarative Workflows},
  author = {William Michael Landau},
  year = {2021},
  note = {R package version 0.1.0},
  url = {https://CRAN.R-project.org/package=targets},
}

@Manual{R-testthat,
  title = {testthat: Unit Testing for R},
  author = {Hadley Wickham},
  year = {2020},
  note = {R package version 2.3.2},
  url = {https://CRAN.R-project.org/package=testthat},
}

@Manual{R-usethis,
  title = {usethis: Automate Package and Project Setup},
  author = {Hadley Wickham and Jennifer Bryan},
  year = {2021},
  note = {R package version 2.0.1},
  url = {https://CRAN.R-project.org/package=usethis},
}

@Manual{R-V8,
  title = {V8: Embedded JavaScript and WebAssembly Engine for R},
  author = {Jeroen Ooms},
  year = {2020},
  note = {R package version 3.4.0},
  url = {https://CRAN.R-project.org/package=V8},
}

@Manual{R-vueR,
  title = {vueR: 'Vuejs' Helpers and 'Htmlwidget'},
  author = {Evan You and Kent Russell},
  year = {2020},
  note = {R package version 0.5.2},
  url = {https://github.com/vue-r/vueR},
}

@Manual{R-waiter,
  title = {waiter: Loading Screen for 'Shiny'},
  author = {John Coene},
  year = {2021},
  note = {https://waiter.john-coene.com/,
https://github.com/JohnCoene/waiter},
}

@Manual{R-websocket,
  title = {websocket: 'WebSocket' Client Library},
  author = {Winston Chang and Joe Cheng and Alan Dipert and Barbara Borges},
  year = {2021},
  note = {R package version 1.3.2},
  url = {https://CRAN.R-project.org/package=websocket},
}

@Manual{R-xaringan,
  title = {xaringan: Presentation Ninja},
  author = {Yihui Xie},
  year = {2020},
  note = {R package version 0.19},
  url = {https://CRAN.R-project.org/package=xaringan},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  note = {ISBN 978-1138700109},
  url = {https://github.com/rstudio/bookdown},
}

@Article{drake2018,
  title = {The drake R package: a pipeline toolkit for reproducibility and high-performance computing},
  author = {William Michael Landau},
  journal = {Journal of Open Source Software},
  year = {2018},
  volume = {3},
  number = {21},
  url = {https://doi.org/10.21105/joss.00550},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Article{jsonlite2014,
  title = {The jsonlite Package: A Practical and Consistent Mapping Between JSON Data and R Objects},
  author = {Jeroen Ooms},
  journal = {arXiv:1403.2805 [stat.CO]},
  year = {2014},
  url = {https://arxiv.org/abs/1403.2805},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
  url = {http://www.crcpress.com/product/isbn/9781466561595},
}

@Book{plotly2020,
  author = {Carson Sievert},
  title = {Interactive Web-Based Data Visualization with R, plotly, and shiny},
  publisher = {Chapman and Hall/CRC},
  year = {2020},
  isbn = {9781138331457},
  url = {https://plotly-r.com},
}

@Book{rmarkdown2018,
  title = {R Markdown: The Definitive Guide},
  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2018},
  note = {ISBN 9781138359338},
  url = {https://bookdown.org/yihui/rmarkdown},
}

@Book{rmarkdown2020,
  title = {R Markdown Cookbook},
  author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2020},
  note = {ISBN 9780367563837},
  url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}

@Article{targets2021,
  title = {The targets R package: a dynamic Make-like function-oriented pipeline toolkit for reproducibility and high-performance computing},
  author = {William Michael Landau},
  journal = {Journal of Open Source Software},
  year = {2021},
  volume = {6},
  number = {57},
  pages = {2959},
  url = {https://doi.org/10.21105/joss.02959},
}

@Article{testthat2011,
  author = {Hadley Wickham},
  title = {testthat: Get Started with Testing},
  journal = {The R Journal},
  year = {2011},
  volume = {3},
  pages = {5--10},
  url = {https://journal.r-project.org/archive/2011-1/RJournal_2011-1_Wickham.pdf},
}