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igv_session_mutant1.xml
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<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<Session genome="C:\Users\jigyasa-arora.OIST\Dropbox (OIST)\t5phage_teachingcourse\t5phage\working_data\sequence.fasta" hasGeneTrack="false" hasSequenceTrack="true" locus="gi|254160123|ref|NC_012967.1|:2177458-2177694" path="C:\Users\jigyasa-arora.OIST\Dropbox (OIST)\t5phage_teachingcourse\t5phage\working_data\igv_session_mutant1.xml" version="8">
<Resources>
<Resource path="C:\Users\jigyasa-arora.OIST\Dropbox (OIST)\t5phage_teachingcourse\t5phage\working_data\mutant1.bam"/>
<Resource path="C:\Users\jigyasa-arora.OIST\Dropbox (OIST)\t5phage_teachingcourse\t5phage\working_data\sorted_mutant1.vcf"/>
<Resource path="C:\Users\jigyasa-arora.OIST\Dropbox (OIST)\t5phage_teachingcourse\t5phage\working_data\filtered_sorted_mutant1.vcf"/>
<Resource path="C:\Users\jigyasa-arora.OIST\Dropbox (OIST)\t5phage_teachingcourse\t5phage\raw_data\GCF_000005845.2_ASM584v2_genomic.gff"/>
</Resources>
<Panel height="80" name="DataPanel" width="1347">
<Track SQUISHED_ROW_HEIGHT="4" altColor="0,0,178" autoScale="false" clazz="org.broad.igv.track.FeatureTrack" color="0,0,178" colorMode="GENOTYPE" displayMode="EXPANDED" featureVisibilityWindow="-1" fontSize="10" id="C:\Users\jigyasa-arora.OIST\Dropbox (OIST)\t5phage_teachingcourse\t5phage\working_data\sorted_mutant1.vcf" name="sorted_mutant1.vcf" renderer="BASIC_FEATURE" siteColorMode="ALLELE_FREQUENCY" sortable="false" visible="true" windowFunction="count"/>
<Track SQUISHED_ROW_HEIGHT="4" altColor="0,0,178" autoScale="false" clazz="org.broad.igv.track.FeatureTrack" color="0,0,178" colorMode="GENOTYPE" displayMode="EXPANDED" featureVisibilityWindow="-1" fontSize="10" id="C:\Users\jigyasa-arora.OIST\Dropbox (OIST)\t5phage_teachingcourse\t5phage\working_data\filtered_sorted_mutant1.vcf" name="filtered_sorted_mutant1.vcf" renderer="BASIC_FEATURE" siteColorMode="ALLELE_FREQUENCY" sortable="false" visible="true" windowFunction="count"/>
</Panel>
<Panel height="341" name="Panel1596508134654" width="1347">
<Track altColor="0,0,178" autoScale="true" color="175,175,175" colorScale="ContinuousColorScale;0.0;17.0;255,255,255;175,175,175" displayMode="COLLAPSED" featureVisibilityWindow="-1" fontSize="10" id="C:\Users\jigyasa-arora.OIST\Dropbox (OIST)\t5phage_teachingcourse\t5phage\working_data\mutant1.bam_coverage" name="mutant1.bam Coverage" showReference="false" snpThreshold="0.2" sortable="true" visible="true">
<DataRange baseline="0.0" drawBaseline="true" flipAxis="false" maximum="13.0" minimum="0.0" type="LINEAR"/>
</Track>
<Track altColor="0,0,178" autoScale="false" clazz="org.broad.igv.track.FeatureTrack" color="0,0,178" displayMode="COLLAPSED" featureVisibilityWindow="-1" fontSize="10" height="60" id="C:\Users\jigyasa-arora.OIST\Dropbox (OIST)\t5phage_teachingcourse\t5phage\working_data\mutant1.bam_junctions" name="mutant1.bam Junctions" sortable="false" visible="false" windowFunction="count">
<DataRange baseline="0.0" drawBaseline="true" flipAxis="false" maximum="60.0" minimum="0.0" type="LINEAR"/>
</Track>
<Track altColor="0,0,178" autoScale="false" color="0,0,178" displayMode="EXPANDED" featureVisibilityWindow="-1" fontSize="10" id="C:\Users\jigyasa-arora.OIST\Dropbox (OIST)\t5phage_teachingcourse\t5phage\working_data\mutant1.bam" name="mutant1.bam" sortable="true" visible="true">
<RenderOptions colorByTag="" colorOption="READ_STRAND" flagUnmappedPairs="false" groupByTag="" maxInsertSize="1000" minInsertSize="50" shadeBasesOption="QUALITY" shadeCenters="true" showAllBases="false" sortByTag=""/>
</Track>
</Panel>
<Panel height="96" name="FeaturePanel" width="1347">
<Track altColor="0,0,178" autoScale="false" color="0,0,178" displayMode="COLLAPSED" featureVisibilityWindow="-1" fontSize="10" id="Reference sequence" name="Reference sequence" sortable="false" visible="true"/>
<Track altColor="0,0,178" autoScale="false" clazz="org.broad.igv.track.FeatureTrack" color="0,0,178" displayMode="COLLAPSED" featureVisibilityWindow="-1" fontSize="10" id="C:\Users\jigyasa-arora.OIST\Dropbox (OIST)\t5phage_teachingcourse\t5phage\raw_data\GCF_000005845.2_ASM584v2_genomic.gff" name="GCF_000005845.2_ASM584v2_genomic.gff" renderer="BASIC_FEATURE" sortable="false" visible="true" windowFunction="count"/>
</Panel>
<PanelLayout dividerFractions="0.16666666666666666,0.7967479674796748"/>
<HiddenAttributes>
<Attribute name="DATA FILE"/>
<Attribute name="DATA TYPE"/>
<Attribute name="NAME"/>
</HiddenAttributes>
</Session>