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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(FMeasure)
export(MetaClustering)
export(MetaclusterCVs)
export(MetaclusterMFIs)
export(add_cell_per_mm)
export(add_cell_ratio)
export(boxplot_clinical)
export(cal_closest_dist)
export(cal_distance)
export(cal_distance_all)
export(cytomapper_cell_plot)
export(cytomapper_plot)
export(diffusionmap_hyp)
export(dist_min)
export(entropy_calc)
export(fast_tsne)
export(fetch_heatmap_dat)
export(fetch_plot_reducedims)
export(fetch_reducedims)
export(filter_cells)
export(filter_cells_by_area)
export(filter_markers)
export(filter_rare_marker_exp)
export(getdiff_hyp)
export(heatmap_anno)
export(heatmap_anno_combined)
export(imcAsinh_trans)
export(init_metadata)
export(interaction_heatmap)
export(make_rds)
export(map_to_singlecells)
export(marker_IQR_delete)
export(marker_outlier_delete)
export(merge_cell_type)
export(metaClustering)
export(metaClustering_consensus)
export(meta_clustering)
export(normalize_hyp)
export(normalize_quantile)
export(pairwise_comparison)
export(pca_hyp)
export(percentile_hyp)
export(phate_hyp)
export(plot2d)
export(plotBranchHeatmap)
export(plotCluster)
export(plotClusterHeatmap)
export(plotHeatmap)
export(plotPieCluster)
export(plotTrajHeatmap)
export(plotViolin)
export(plot_heatmap)
export(prepare_steinbock_imgcsv)
export(processingCluster)
export(quick_violin)
export(quick_violin2)
export(remove_duplicate)
export(run_SOM)
export(run_clara)
export(run_cluster)
export(run_fastpg)
export(run_hclust)
export(run_kmeans)
export(run_mclust)
export(run_phenograph)
export(sd_censor)
export(sd_censor_max)
export(set_metadata_info)
export(simpleAsinh_trans)
export(spillover_correction)
export(sub_cluster)
export(subset_by_cell_ids)
export(subset_by_cluster_id)
export(subset_by_feature)
export(subset_by_marker_heatmap_exp)
export(subset_hyp)
export(temp_plot)
export(tsne_hyp)
export(umap_hyp)
export(update_feature)
export(update_metadata)
export(update_metadata_info)
export(update_sce)
export(value_censor)
export(workflow)
export(write_anno_by_cid)
export(write_anno_sce_by_cid)
export(zscore_censor)
import(Rtsne)
import(data.table)
import(ggplot2)
import(pheatmap)
importFrom(FlowSOM,SOM)
importFrom(cluster,clara)
importFrom(grDevices,colorRampPalette)
importFrom(igraph,distances)
importFrom(igraph,graph.adjacency)
importFrom(igraph,simplify)
importFrom(mclust,Mclust)
importFrom(mclust,mclustBIC)
importFrom(stats,aggregate)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,kmeans)