Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

error for runFastPCA #14

Open
f-kvh opened this issue Mar 2, 2023 · 1 comment
Open

error for runFastPCA #14

f-kvh opened this issue Mar 2, 2023 · 1 comment

Comments

@f-kvh
Copy link

f-kvh commented Mar 2, 2023

Hi, when I select the "fixedNum" = 40000 cells as below
fcs.data <- runExprsMerge(fcs.files, comp = FALSE, transformMethod = "none", mergeMethod = "fixed", fixedNum = 40000)

I get error message in cyt <- runFastPCA(cyt)
Error in La.svd(x, nu = 0) : infinite or missing values in 'x'
I looked at [email protected] & [email protected] there are no missing values/NA.
Can you help to solve it?
@f-kvh
Copy link
Author

f-kvh commented Mar 2, 2023

I should add when I reduce the numbers as default (ceil = 2000) then it works

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@f-kvh