Skip to content

Latest commit

 

History

History
99 lines (52 loc) · 2.29 KB

NEWS.md

File metadata and controls

99 lines (52 loc) · 2.29 KB
Raw

BioInstaller 0.3.7

New features

  • support bitbucket repo
  • remove function "check_shiny_dep" use pacman install dependences
  • add new databases and tools (meta and files)

Minor bugs fixed

  • fix "version_avaliable" to "version_available" in ~10 item

BioInstaller 0.3.6

New features

  • add copy_plugins and copy_configs functions to restore the plugins and config
  • use fromJSON to access the github APIs, which can avoid the SSL problem on windows platform

BioInstaller 0.3.5.7000

Minor bugs fixed

  • Add conda and spack in the Docker image

BioInstaller 0.3.5.6000

New features

  • Shiny application supported

  • Numbers increased of included items, especialy the databases

  • Use github forum

  • Add parameter overwrite in install.bioinfo

  • Add Opencpu, Shiny and Rstudio service in Docker container

  • Use 'Setting' module in Shiny application to manage the variables

Minor bugs fixed

  • Check and confirm delete the existing dir only when clone a github project

BioInstaller 0.3.3

New features

  • Multiple resources file be supported

  • Adjust and set db, github, nongithub, web and docker in inst/extdata/config

  • Meta information of software and database be added in newly supported items

  • Decompress can be auto-recognized

  • Docker supported

Minor bugs fixed

  • change.info default is to write tempfile() now

  • Fixed a bug when set save.to.db to FALSE. It can raise installed fail

BioInstaller 0.2.1

New features

  • ANNOVAR databases can be download using inst/extdata/databases/ANNOVAR.toml

  • Move databases toml file to inst/extdata/databases/

  • local.source be supported (Don't need download the source code again when it were download already)

  • Function docker.pull and docker.search be added to download and search docker repo

  • Function craw.all.versions be added to crawl source code of all version (Sotwares or databases)

BioInstaller 0.1.2

New features

  • #R# CMD #R# marked the R CMD need to be runed

  • glue parse be supported

  • Softwares versions of github.cfg be fetched from github API

  • destdir and download.dir can be setted respectively

  • verbose default is TRUE, show log infomation

Minor bugs fixed

  • Fix unlink() clean tests files fail on windows (force = TRUE)