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[FEAT] Fix, Implement DciA Figure #89

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falquaddoomi opened this issue Oct 9, 2024 · 2 comments · May be fixed by #92
Open

[FEAT] Fix, Implement DciA Figure #89

falquaddoomi opened this issue Oct 9, 2024 · 2 comments · May be fixed by #92
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coding Coding experience (of any sort) would be helpful dataviz Data visualization enhancement New feature or request outreachy for outreachy interns package R package dev

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@falquaddoomi
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falquaddoomi commented Oct 9, 2024

We need to add figures 2 and 4 from the DciA paper, https://journals.asm.org/doi/epub/10.1128/jb.00163-22. Similar to #88, we have some code, written when the paper was published, that was used to generate those figures, but it's likely out of date and wasn't written to use MolEvolvR's job outputs. The figure will need to be integrated into the MolEvolvR web app, both for displaying on the site and including in the downloadable report.

Any progress on the following tasks would be appreciated:

  • getting the figure to render with its original inputs
  • adapting the code to use MolEvolvR's job output

I've included a sample MolEvolvR job output, 5uNQ9l, to demonstrate what files are typically included in a MolEvolvR job.

5uNQ9l_full.tar.gz

See PR #92 for the current code. If you self-assign this issue also assign yourself to that PR. Once your PR is ready, you can convert it from a draft to a regular PR and request review. If you prefer to not use that PR as a starting point, you're also free to create your own.

@falquaddoomi falquaddoomi added enhancement New feature or request outreachy for outreachy interns package R package dev coding Coding experience (of any sort) would be helpful labels Oct 9, 2024
@falquaddoomi falquaddoomi linked a pull request Oct 9, 2024 that will close this issue
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@falquaddoomi falquaddoomi added the dataviz Data visualization label Oct 9, 2024
@Klangina
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Could this be assigned to me?

@falquaddoomi
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Hey @Klangina, sure thing; I've assigned it to you.

@jananiravi jananiravi changed the title Fix, Implement DciA Figure 🆕 [FEAT] Fix, Implement DciA Figure Oct 26, 2024
@jananiravi jananiravi changed the title 🆕 [FEAT] Fix, Implement DciA Figure [FEAT] Fix, Implement DciA Figure Oct 26, 2024
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