Takes the resulting file of an efetch run on the ipg database and
+Takes the resulting file of an efetch run on the ipg database and +append lineage, and taxid columns
+Usage
+IPG2Lineage(
+ accessions,
+ ipg_file,
+ refseq_assembly_path,
+ genbank_assembly_path,
+ lineagelookup_path
+)
+
+IPG2Lineage(
+ accessions,
+ ipg_file,
+ refseq_assembly_path,
+ genbank_assembly_path,
+ lineagelookup_path
+)
Arguments
+ + +- accessions +
Character vector of protein accessions
+
+
+- ipg_file +
Path to the file containing results of an efetch run on the +ipg database. The protein accession in 'accessions' should be contained in this +file
+
+
+- lineagelookup_path +
String of the path to the lineage lookup file +(taxid to lineage mapping). This file can be generated using the +"create_lineage_lookup()" function
+
+
+- assembly_path +
String of the path to the assembly_summary path +This file can be generated using the "DownloadAssemblySummary()" function
+
+