pom.xml

<?xml version="1.0" encoding="UTF-8"?>

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <groupId>org.jbei</groupId>
    <artifactId>wors</artifactId>
    <version>0.3.0</version>
    <packaging>war</packaging>

    <name>wors</name>
    <url>https://www.webofregistries.org</url>

    <properties>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <maven.compiler.source>1.8</maven.compiler.source>
        <maven.compiler.target>1.8</maven.compiler.target>
    </properties>

    <dependencies>
        <dependency>
            <groupId>junit</groupId>
            <artifactId>junit</artifactId>
            <version>4.12</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.glassfish.jersey.containers</groupId>
            <artifactId>jersey-container-servlet-core</artifactId>
            <version>2.28</version>
        </dependency>
        <dependency>
            <groupId>org.glassfish.jersey.media</groupId>
            <artifactId>jersey-media-multipart</artifactId>
            <version>2.28</version>
        </dependency>
        <dependency>
            <groupId>org.glassfish.jersey.inject</groupId>
            <artifactId>jersey-hk2</artifactId>
            <version>2.28</version>
        </dependency>
        <dependency>
            <groupId>org.glassfish.jaxb</groupId>
            <artifactId>jaxb-runtime</artifactId>
            <version>2.3.1</version>
            <scope>runtime</scope>
        </dependency>
        <dependency>
            <groupId>javax.xml.bind</groupId>
            <artifactId>jaxb-api</artifactId>
            <version>2.3.1</version>
        </dependency>
        <dependency>
            <groupId>commons-io</groupId>
            <artifactId>commons-io</artifactId>
            <version>2.6</version>
        </dependency>
        <dependency>
            <groupId>com.google.code.gson</groupId>
            <artifactId>gson</artifactId>
            <version>2.8.5</version>
            <scope>compile</scope>
        </dependency>
        <dependency>
            <groupId>javax.servlet</groupId>
            <artifactId>javax.servlet-api</artifactId>
            <version>3.1.0</version>
            <scope>provided</scope>
        </dependency>
        <dependency>
            <groupId>ch.qos.logback</groupId>
            <artifactId>logback-classic</artifactId>
            <version>1.2.3</version>
        </dependency>
        <dependency>
            <groupId>org.apache.lucene</groupId>
            <artifactId>lucene-core</artifactId>
            <version>7.5.0</version>
        </dependency>
        <dependency>
            <groupId>org.apache.lucene</groupId>
            <artifactId>lucene-queryparser</artifactId>
            <version>7.5.0</version>
        </dependency>
        <dependency>
            <groupId>com.opencsv</groupId>
            <artifactId>opencsv</artifactId>
            <version>4.3.2</version>
        </dependency>
        <dependency>
            <groupId>org.biojava</groupId>
            <artifactId>core</artifactId>
            <version>1.9.2</version>
        </dependency>
        <dependency>
            <groupId>org.jsoup</groupId>
            <artifactId>jsoup</artifactId>
            <version>1.11.3</version>
        </dependency>
        <dependency>
            <groupId>com.google.guava</groupId>
            <artifactId>guava</artifactId>
            <version>27.0-jre</version>
        </dependency>
        <dependency>
            <groupId>org.sbolstandard</groupId>
            <artifactId>libSBOLj</artifactId>
            <version>2.3.1</version>
            <exclusions>
                <exclusion>
                    <groupId>javassist</groupId>
                    <artifactId>javassist</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
    </dependencies>

    <build>
        <outputDirectory>target</outputDirectory>
        <resources>
            <resource>
                <filtering>false</filtering>
                <directory>src/main/resources</directory>
            </resource>
            <resource>
                <filtering>false</filtering>
                <directory>src/main/java</directory>
                <includes>
                    <include>**</include>
                </includes>
                <excludes>
                    <exclude>**/*.java</exclude>
                </excludes>
            </resource>
        </resources>
        <plugins>
            <plugin>
                <inherited>true</inherited>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>3.3</version>
                <configuration>
                    <source>1.8</source>
                    <target>1.8</target>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.mortbay.jetty</groupId>
                <artifactId>maven-jetty-plugin</artifactId>
                <version>6.1.26</version>
                <configuration>
                    <scanIntervalSeconds>5</scanIntervalSeconds>
                    <jettyConfig>jetty-debug.xml</jettyConfig>
                    <webAppConfig>
                        <contextPath>/</contextPath>
                    </webAppConfig>
                </configuration>
            </plugin>
            <plugin>
                <artifactId>maven-clean-plugin</artifactId>
                <version>3.0.0</version>
            </plugin>
            <plugin>
                <artifactId>maven-resources-plugin</artifactId>
                <version>3.0.2</version>
            </plugin>
            <plugin>
                <artifactId>maven-surefire-plugin</artifactId>
                <version>2.20.1</version>
            </plugin>
            <plugin>
                <artifactId>maven-war-plugin</artifactId>
                <version>3.2.0</version>
            </plugin>
            <plugin>
                <artifactId>maven-install-plugin</artifactId>
                <version>2.5.2</version>
            </plugin>
            <plugin>
                <artifactId>maven-deploy-plugin</artifactId>
                <version>2.8.2</version>
            </plugin>
        </plugins>
    </build>
</project>