diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..2ccbe46 --- /dev/null +++ b/.gitignore @@ -0,0 +1 @@ +/node_modules/ diff --git a/README.md b/README.md index c78247c..17c9c9f 100644 --- a/README.md +++ b/README.md @@ -1 +1,8 @@ -The new schematrons are here. +# jats-schematrons + +The `schematrons` folder contains Schematron files that implement recommendations developed by the JATS4R group. + + +## Testing + +`npm t` will run the tests in the `__tests__` folder against the XML files in the `testfiles` folder. diff --git a/__tests__/contributors.test.js b/__tests__/contributors.test.js new file mode 100644 index 0000000..1a058ef --- /dev/null +++ b/__tests__/contributors.test.js @@ -0,0 +1,16 @@ +const validate = require('../lib/validate') + +describe('authors and affiliations', () => { + test('aff label', async () => { + const results = await validate('auths-affs-test1.xml') + + expect(results.errors).toHaveLength(2) + expect(results.warnings).toHaveLength(1) + }) + + test('author affiliation xref', async () => { + const results = await validate('auths-affs-test2.xml') + + expect(results.errors).toHaveLength(1) + }) +}) diff --git a/lib/validate.js b/lib/validate.js new file mode 100644 index 0000000..470ffb3 --- /dev/null +++ b/lib/validate.js @@ -0,0 +1,15 @@ +const { readFileSync } = require('fs') +const { parseXmlString } = require('libxmljs') +const { validate } = require('schematron-runner') + +module.exports = name => { + const xml = readFileSync(`${__dirname}/../testfiles/${name}`, 'utf8') + + const doc = parseXmlString(xml) + + if (doc.errors.length) { + throw new Error(doc.errors.map(error => `ERROR: ${error.message}`).join('\n')) + } + + return validate(doc.toString(), `${__dirname}/../schematrons/1.0/jats4r.sch`) +} diff --git a/package-lock.json b/package-lock.json index c985444..b609a3f 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,5 +1,5347 @@ { "name": "@jats4r/schematrons", "version": "0.0.4", - 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3c8ad23..29c6e66 100644 --- a/package.json +++ b/package.json @@ -4,8 +4,17 @@ "files": [ "schematrons" ], + "license": "MIT", "main": "schematrons/1.0/jats4r.sch", "publishConfig": { "access": "public" + }, + "devDependencies": { + "jest": "^24.8.0", + "libxmljs": "^0.19.5", + "schematron-runner": "^1.0.0" + }, + "scripts": { + "test": "jest" } } diff --git a/testfiles/auths-affs-test1.xml b/testfiles/auths-affs-test1.xml index ae0d585..ce4e8ca 100644 --- a/testfiles/auths-affs-test1.xml +++ b/testfiles/auths-affs-test1.xml @@ -1,18 +1,18 @@ +PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD v1.1 20151215//EN" " https://jats.nlm.nih.gov/archiving/1.1/JATS-archivearticle1.dtd"> - -
@@ -33,14 +33,14 @@ Expected Schematron Errors 10.1371/journal.pbio.3000188 PBIOLOGY-D-18-00631 - + Exact replication: Foundation of science or game of chance? The challenges of exact replication - + Affiliationo 1 2Affiliation 212USA - - + +

The authors have declared that no competing interests exist.

@@ -90,7 +90,7 @@ Expected Schematron Errors e3000188 © 2019 Piper et al - 2019 + 201 Piper et al http://creativecommons.org/licenses/by/4.0/ @@ -166,8 +166,8 @@ Expected Schematron Errors -

In modern times, replication - +

In modern times, replication + of results has been considered an integral part of the scientific process, at least, since Karl Popper’s famous declaration [2], and has again taken center @@ -230,7 +230,7 @@ Expected Schematron Errors 0.3–48.0 mm3]; standardized effect size of 0.96 (95% CI: 0.01–1.87); t = 2.136; p = 0.047; see S1 Fig).

- + Replacing mice with dice? @@ -1340,6 +1340,6 @@ Expected Schematron Errors >28298413 - +
diff --git a/testfiles/auths-affs-test2.xml b/testfiles/auths-affs-test2.xml index 2562ec3..962d000 100644 --- a/testfiles/auths-affs-test2.xml +++ b/testfiles/auths-affs-test2.xml @@ -1,15 +1,15 @@ - -
@@ -30,14 +30,14 @@ Expected Schematron Errors 10.1371/journal.pbio.3000188 PBIOLOGY-D-18-00631 - + Exact replication: Foundation of science or game of chance? The challenges of exact replication - + - + Affiliationo 1 Affiliation 212USA - +

The authors have declared that no competing interests exist.

@@ -163,8 +163,8 @@ Expected Schematron Errors -

In modern times, replication - +

In modern times, replication + of results has been considered an integral part of the scientific process, at least, since Karl Popper’s famous declaration [2], and has again taken center @@ -227,7 +227,7 @@ Expected Schematron Errors 0.3–48.0 mm3]; standardized effect size of 0.96 (95% CI: 0.01–1.87); t = 2.136; p = 0.047; see S1 Fig).

- + Replacing mice with dice? @@ -1337,6 +1337,6 @@ Expected Schematron Errors >28298413 - +