From 681b36c1eb504c5402c9b0116422695062018a70 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 16 Dec 2024 17:51:06 +0000 Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit updates: - [github.com/mwouts/jupytext: v1.16.4b → v1.16.5](https://github.com/mwouts/jupytext/compare/v1.16.4b...v1.16.5) --- .pre-commit-config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index c72878584..678076ea7 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -20,7 +20,7 @@ repos: hooks: - id: markdownlint - repo: https://github.com/mwouts/jupytext - rev: v1.16.4b + rev: v1.16.5 hooks: - id: jupytext args: [--pipe, black] From ec3542cf7bf2138b48cd26276384ac79830caa24 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 16 Dec 2024 17:52:52 +0000 Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- docs/source/api/core.md | 2 +- docs/source/api/core/axes.md | 2 +- docs/source/api/core/base_model.md | 2 +- docs/source/api/core/config.md | 2 +- docs/source/api/core/constants.md | 2 +- docs/source/api/core/constants_class.md | 2 +- docs/source/api/core/constants_loader.md | 2 +- docs/source/api/core/core_components.md | 2 +- docs/source/api/core/data.md | 2 +- docs/source/api/core/exceptions.md | 2 +- docs/source/api/core/grid.md | 2 +- docs/source/api/core/logger.md | 2 +- docs/source/api/core/readers.md | 2 +- docs/source/api/core/registry.md | 2 +- docs/source/api/core/schema.md | 2 +- docs/source/api/core/utils.md | 2 +- docs/source/api/core/variables.md | 2 +- docs/source/api/example_data.md | 2 +- docs/source/api/main.md | 2 +- docs/source/api/models.md | 2 +- docs/source/api/models/abiotic.md | 2 +- docs/source/api/models/abiotic/abiotic_constants.md | 2 +- docs/source/api/models/abiotic/abiotic_model.md | 2 +- docs/source/api/models/abiotic/abiotic_tools.md | 2 +- docs/source/api/models/abiotic/conductivities.md | 2 +- docs/source/api/models/abiotic/energy_balance.md | 2 +- docs/source/api/models/abiotic/soil_energy_balance.md | 2 +- docs/source/api/models/abiotic/wind.md | 2 +- docs/source/api/models/abiotic_simple.md | 2 +- .../api/models/abiotic_simple/abiotic_simple_constants.md | 2 +- docs/source/api/models/abiotic_simple/abiotic_simple_model.md | 2 +- docs/source/api/models/abiotic_simple/microclimate.md | 2 +- docs/source/api/models/animal.md | 2 +- docs/source/api/models/animal/animal_cohorts.md | 2 +- docs/source/api/models/animal/animal_model.md | 2 +- docs/source/api/models/animal/animal_traits.md | 2 +- docs/source/api/models/animal/constants.md | 2 +- docs/source/api/models/animal/decay.md | 2 +- docs/source/api/models/animal/functional_group.md | 2 +- docs/source/api/models/animal/plant_resources.md | 2 +- docs/source/api/models/animal/protocols.md | 2 +- docs/source/api/models/animal/scaling_functions.md | 2 +- docs/source/api/models/hydrology.md | 2 +- docs/source/api/models/hydrology/above_ground.md | 2 +- docs/source/api/models/hydrology/below_ground.md | 2 +- docs/source/api/models/hydrology/constants.md | 2 +- docs/source/api/models/hydrology/hydrology_model.md | 2 +- docs/source/api/models/hydrology/hydrology_tools.md | 2 +- docs/source/api/models/litter.md | 2 +- docs/source/api/models/litter/carbon.md | 2 +- docs/source/api/models/litter/chemistry.md | 2 +- docs/source/api/models/litter/constants.md | 2 +- docs/source/api/models/litter/env_factors.md | 2 +- docs/source/api/models/litter/inputs.md | 2 +- docs/source/api/models/litter/litter_model.md | 2 +- docs/source/api/models/plants.md | 2 +- docs/source/api/models/plants/plant_structures.md | 2 +- docs/source/api/models/plants/plants_model.md | 2 +- docs/source/api/models/soil.md | 2 +- docs/source/api/models/soil/constants.md | 2 +- docs/source/api/models/soil/env_factors.md | 2 +- docs/source/api/models/soil/pools.md | 2 +- docs/source/api/models/soil/soil_model.md | 2 +- docs/source/bibliography.md | 2 +- docs/source/development/contributing.md | 2 +- docs/source/development/contributing/code_qa_and_typing.md | 2 +- docs/source/development/contributing/code_testing.md | 2 +- docs/source/development/contributing/github_actions.md | 2 +- docs/source/development/contributing/overview.md | 2 +- docs/source/development/contributing/release_process.md | 2 +- docs/source/development/design.md | 2 +- docs/source/development/design/core.md | 2 +- docs/source/development/design/defining_new_models.md | 2 +- docs/source/development/documentation.md | 2 +- docs/source/development/documentation/api_generation.md | 2 +- docs/source/development/documentation/docstring_style.md | 2 +- docs/source/development/documentation/docstring_style.py | 2 +- docs/source/development/documentation/documentation.md | 2 +- docs/source/development/documentation/jupyter_notebooks.md | 2 +- docs/source/index.md | 2 +- docs/source/using_the_ve/configuration/axes.md | 2 +- docs/source/using_the_ve/configuration/config.md | 2 +- docs/source/using_the_ve/configuration/constants.md | 2 +- docs/source/using_the_ve/configuration/grid.md | 2 +- docs/source/using_the_ve/data/data.md | 2 +- docs/source/using_the_ve/data/notes_preprocessing.md | 2 +- docs/source/using_the_ve/example_data.md | 2 +- docs/source/using_the_ve/getting_started.md | 2 +- docs/source/using_the_ve/ve_run.md | 2 +- docs/source/using_the_ve/virtual_ecosystem_in_use.md | 2 +- .../virtual_ecosystem/implementation/abiotic_implementation.md | 2 +- .../implementation/abiotic_simple_implementation.md | 2 +- .../virtual_ecosystem/implementation/animal_implementation.md | 2 +- .../implementation/core_components_overview.md | 2 +- .../implementation/hydrology_implementation.md | 2 +- docs/source/virtual_ecosystem/implementation/implementation.md | 2 +- .../virtual_ecosystem/implementation/litter_implementation.md | 2 +- docs/source/virtual_ecosystem/implementation/main_simulation.md | 2 +- .../virtual_ecosystem/implementation/plants_implementation.md | 2 +- .../virtual_ecosystem/implementation/science_model_overview.md | 2 +- .../virtual_ecosystem/implementation/soil_implementation.md | 2 +- docs/source/virtual_ecosystem/implementation/var_generator.py | 2 +- docs/source/virtual_ecosystem/implementation/variables.md | 2 +- docs/source/virtual_ecosystem/theory/abiotic_theory.md | 2 +- docs/source/virtual_ecosystem/theory/animals/animal_theory.md | 2 +- .../virtual_ecosystem/theory/animals/carcasses_and_excrement.md | 2 +- docs/source/virtual_ecosystem/theory/hydrology_theory.md | 2 +- docs/source/virtual_ecosystem/theory/microclimate_theory.md | 2 +- docs/source/virtual_ecosystem/theory/plant_theory.md | 2 +- .../source/virtual_ecosystem/theory/soil/environmental_links.md | 2 +- docs/source/virtual_ecosystem/theory/soil/litter_theory.md | 2 +- docs/source/virtual_ecosystem/theory/soil/soil_theory.md | 2 +- docs/source/virtual_ecosystem/theory/soil/summary.md | 2 +- docs/source/virtual_ecosystem/theory/theory.md | 2 +- 114 files changed, 114 insertions(+), 114 deletions(-) diff --git a/docs/source/api/core.md b/docs/source/api/core.md index b50f507fb..45de5d969 100644 --- a/docs/source/api/core.md +++ b/docs/source/api/core.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/core/axes.md b/docs/source/api/core/axes.md index 5f2ff7a47..9d182235b 100644 --- a/docs/source/api/core/axes.md +++ b/docs/source/api/core/axes.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/core/base_model.md b/docs/source/api/core/base_model.md index bb3ae7795..84ad04299 100644 --- a/docs/source/api/core/base_model.md +++ b/docs/source/api/core/base_model.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/core/config.md b/docs/source/api/core/config.md index 5309b143f..5ac6dba44 100644 --- a/docs/source/api/core/config.md +++ b/docs/source/api/core/config.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/core/constants.md b/docs/source/api/core/constants.md index 60139ef44..19dfb0b68 100644 --- a/docs/source/api/core/constants.md +++ b/docs/source/api/core/constants.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/core/constants_class.md b/docs/source/api/core/constants_class.md index 56577014c..12def7c83 100644 --- a/docs/source/api/core/constants_class.md +++ b/docs/source/api/core/constants_class.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/core/constants_loader.md b/docs/source/api/core/constants_loader.md index 46fb64149..37cc51f41 100644 --- a/docs/source/api/core/constants_loader.md +++ b/docs/source/api/core/constants_loader.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/core/core_components.md b/docs/source/api/core/core_components.md index 82528c351..9a8b2ea7a 100644 --- a/docs/source/api/core/core_components.md +++ b/docs/source/api/core/core_components.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/core/data.md b/docs/source/api/core/data.md index 5900015b1..aaa2f57a1 100644 --- a/docs/source/api/core/data.md +++ b/docs/source/api/core/data.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/core/exceptions.md b/docs/source/api/core/exceptions.md index 58e1a907e..2d99d975d 100644 --- a/docs/source/api/core/exceptions.md +++ b/docs/source/api/core/exceptions.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/core/grid.md b/docs/source/api/core/grid.md index 3e0a93a9d..a5c5587f0 100644 --- a/docs/source/api/core/grid.md +++ b/docs/source/api/core/grid.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/core/logger.md b/docs/source/api/core/logger.md index 3b2396c40..86ec656bf 100644 --- a/docs/source/api/core/logger.md +++ b/docs/source/api/core/logger.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/core/readers.md b/docs/source/api/core/readers.md index 515c0cf4d..6c901d9e9 100644 --- a/docs/source/api/core/readers.md +++ b/docs/source/api/core/readers.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/core/registry.md b/docs/source/api/core/registry.md index 527754a86..afa819486 100644 --- a/docs/source/api/core/registry.md +++ b/docs/source/api/core/registry.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/core/schema.md b/docs/source/api/core/schema.md index cb38b4470..4a84cef90 100644 --- a/docs/source/api/core/schema.md +++ b/docs/source/api/core/schema.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/core/utils.md b/docs/source/api/core/utils.md index 630676693..56c3814bf 100644 --- a/docs/source/api/core/utils.md +++ b/docs/source/api/core/utils.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/core/variables.md b/docs/source/api/core/variables.md index 052dc95ab..c81363a29 100644 --- a/docs/source/api/core/variables.md +++ b/docs/source/api/core/variables.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: vr_python3 language: python diff --git a/docs/source/api/example_data.md b/docs/source/api/example_data.md index 96787dc27..7924eeb67 100644 --- a/docs/source/api/example_data.md +++ b/docs/source/api/example_data.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/main.md b/docs/source/api/main.md index 8c28d7b5b..8ae67b95d 100644 --- a/docs/source/api/main.md +++ b/docs/source/api/main.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models.md b/docs/source/api/models.md index ac5dc5ea9..c5ad6ac1a 100644 --- a/docs/source/api/models.md +++ b/docs/source/api/models.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/abiotic.md b/docs/source/api/models/abiotic.md index 0511d3ab1..c9064dbb9 100644 --- a/docs/source/api/models/abiotic.md +++ b/docs/source/api/models/abiotic.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/abiotic/abiotic_constants.md b/docs/source/api/models/abiotic/abiotic_constants.md index cd6c12ca4..40424e966 100644 --- a/docs/source/api/models/abiotic/abiotic_constants.md +++ b/docs/source/api/models/abiotic/abiotic_constants.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/abiotic/abiotic_model.md b/docs/source/api/models/abiotic/abiotic_model.md index 2f9f9f32b..a250c9f0f 100644 --- a/docs/source/api/models/abiotic/abiotic_model.md +++ b/docs/source/api/models/abiotic/abiotic_model.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/abiotic/abiotic_tools.md b/docs/source/api/models/abiotic/abiotic_tools.md index 57aa7e6cc..f42029720 100644 --- a/docs/source/api/models/abiotic/abiotic_tools.md +++ b/docs/source/api/models/abiotic/abiotic_tools.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/abiotic/conductivities.md b/docs/source/api/models/abiotic/conductivities.md index 5abd9cc08..11bde936b 100644 --- a/docs/source/api/models/abiotic/conductivities.md +++ b/docs/source/api/models/abiotic/conductivities.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/abiotic/energy_balance.md b/docs/source/api/models/abiotic/energy_balance.md index 0f726bf54..93c10305d 100644 --- a/docs/source/api/models/abiotic/energy_balance.md +++ b/docs/source/api/models/abiotic/energy_balance.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/abiotic/soil_energy_balance.md b/docs/source/api/models/abiotic/soil_energy_balance.md index b7c85a95f..a6871e12b 100644 --- a/docs/source/api/models/abiotic/soil_energy_balance.md +++ b/docs/source/api/models/abiotic/soil_energy_balance.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/abiotic/wind.md b/docs/source/api/models/abiotic/wind.md index 332bcd2d2..df5153634 100644 --- a/docs/source/api/models/abiotic/wind.md +++ b/docs/source/api/models/abiotic/wind.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/abiotic_simple.md b/docs/source/api/models/abiotic_simple.md index ad8d86106..c877d731e 100644 --- a/docs/source/api/models/abiotic_simple.md +++ b/docs/source/api/models/abiotic_simple.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/abiotic_simple/abiotic_simple_constants.md b/docs/source/api/models/abiotic_simple/abiotic_simple_constants.md index 5ac4aca24..820ec3f87 100644 --- a/docs/source/api/models/abiotic_simple/abiotic_simple_constants.md +++ b/docs/source/api/models/abiotic_simple/abiotic_simple_constants.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/abiotic_simple/abiotic_simple_model.md b/docs/source/api/models/abiotic_simple/abiotic_simple_model.md index 8de0ffbd0..dcb492c21 100644 --- a/docs/source/api/models/abiotic_simple/abiotic_simple_model.md +++ b/docs/source/api/models/abiotic_simple/abiotic_simple_model.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/abiotic_simple/microclimate.md b/docs/source/api/models/abiotic_simple/microclimate.md index 843dfaa07..bc0f9bd7e 100644 --- a/docs/source/api/models/abiotic_simple/microclimate.md +++ b/docs/source/api/models/abiotic_simple/microclimate.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/animal.md b/docs/source/api/models/animal.md index 22c5938b2..b8bdb223c 100644 --- a/docs/source/api/models/animal.md +++ b/docs/source/api/models/animal.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/animal/animal_cohorts.md b/docs/source/api/models/animal/animal_cohorts.md index 1843a1e3d..f1a8957e5 100644 --- a/docs/source/api/models/animal/animal_cohorts.md +++ b/docs/source/api/models/animal/animal_cohorts.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/animal/animal_model.md b/docs/source/api/models/animal/animal_model.md index 8aa8e7577..bfeae2a3f 100644 --- a/docs/source/api/models/animal/animal_model.md +++ b/docs/source/api/models/animal/animal_model.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/animal/animal_traits.md b/docs/source/api/models/animal/animal_traits.md index 9ac5a3281..3a2f5021e 100644 --- a/docs/source/api/models/animal/animal_traits.md +++ b/docs/source/api/models/animal/animal_traits.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/animal/constants.md b/docs/source/api/models/animal/constants.md index ef476b43c..687e9b137 100644 --- a/docs/source/api/models/animal/constants.md +++ b/docs/source/api/models/animal/constants.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/animal/decay.md b/docs/source/api/models/animal/decay.md index 0a60311b0..b103574d0 100644 --- a/docs/source/api/models/animal/decay.md +++ b/docs/source/api/models/animal/decay.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/animal/functional_group.md b/docs/source/api/models/animal/functional_group.md index 694059729..ff33d94f4 100644 --- a/docs/source/api/models/animal/functional_group.md +++ b/docs/source/api/models/animal/functional_group.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/animal/plant_resources.md b/docs/source/api/models/animal/plant_resources.md index fde18b937..0486c1719 100644 --- a/docs/source/api/models/animal/plant_resources.md +++ b/docs/source/api/models/animal/plant_resources.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/animal/protocols.md b/docs/source/api/models/animal/protocols.md index 0720942ba..936b36ac4 100644 --- a/docs/source/api/models/animal/protocols.md +++ b/docs/source/api/models/animal/protocols.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/animal/scaling_functions.md b/docs/source/api/models/animal/scaling_functions.md index 9696c4c65..fdbfe86ca 100644 --- a/docs/source/api/models/animal/scaling_functions.md +++ b/docs/source/api/models/animal/scaling_functions.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/hydrology.md b/docs/source/api/models/hydrology.md index a4c29c63a..538663b49 100644 --- a/docs/source/api/models/hydrology.md +++ b/docs/source/api/models/hydrology.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/hydrology/above_ground.md b/docs/source/api/models/hydrology/above_ground.md index 225fd9d43..9a4fb8845 100644 --- a/docs/source/api/models/hydrology/above_ground.md +++ b/docs/source/api/models/hydrology/above_ground.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/hydrology/below_ground.md b/docs/source/api/models/hydrology/below_ground.md index 5cdd7bbca..1e0b37d20 100644 --- a/docs/source/api/models/hydrology/below_ground.md +++ b/docs/source/api/models/hydrology/below_ground.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/hydrology/constants.md b/docs/source/api/models/hydrology/constants.md index 2cbbd90a3..135b83d8a 100644 --- a/docs/source/api/models/hydrology/constants.md +++ b/docs/source/api/models/hydrology/constants.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/hydrology/hydrology_model.md b/docs/source/api/models/hydrology/hydrology_model.md index d824cf4fd..d53b9a64c 100644 --- a/docs/source/api/models/hydrology/hydrology_model.md +++ b/docs/source/api/models/hydrology/hydrology_model.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/hydrology/hydrology_tools.md b/docs/source/api/models/hydrology/hydrology_tools.md index 6c2772cb1..a673a5542 100644 --- a/docs/source/api/models/hydrology/hydrology_tools.md +++ b/docs/source/api/models/hydrology/hydrology_tools.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/litter.md b/docs/source/api/models/litter.md index 3bad81ebd..88a980fa7 100644 --- a/docs/source/api/models/litter.md +++ b/docs/source/api/models/litter.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/litter/carbon.md b/docs/source/api/models/litter/carbon.md index 8719e4c06..586d30bc5 100644 --- a/docs/source/api/models/litter/carbon.md +++ b/docs/source/api/models/litter/carbon.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/litter/chemistry.md b/docs/source/api/models/litter/chemistry.md index e0d2f57e5..765a7ad92 100644 --- a/docs/source/api/models/litter/chemistry.md +++ b/docs/source/api/models/litter/chemistry.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/litter/constants.md b/docs/source/api/models/litter/constants.md index 21e52a125..2482a5270 100644 --- a/docs/source/api/models/litter/constants.md +++ b/docs/source/api/models/litter/constants.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/litter/env_factors.md b/docs/source/api/models/litter/env_factors.md index e7fe29750..3cc5e354e 100644 --- a/docs/source/api/models/litter/env_factors.md +++ b/docs/source/api/models/litter/env_factors.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/litter/inputs.md b/docs/source/api/models/litter/inputs.md index 70177f21d..27a1cc7c1 100644 --- a/docs/source/api/models/litter/inputs.md +++ b/docs/source/api/models/litter/inputs.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/litter/litter_model.md b/docs/source/api/models/litter/litter_model.md index d3888a096..549f11926 100644 --- a/docs/source/api/models/litter/litter_model.md +++ b/docs/source/api/models/litter/litter_model.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/plants.md b/docs/source/api/models/plants.md index 5c7bdd850..8108879cc 100644 --- a/docs/source/api/models/plants.md +++ b/docs/source/api/models/plants.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/plants/plant_structures.md b/docs/source/api/models/plants/plant_structures.md index e5ab24d12..93cf0cd36 100644 --- a/docs/source/api/models/plants/plant_structures.md +++ b/docs/source/api/models/plants/plant_structures.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/plants/plants_model.md b/docs/source/api/models/plants/plants_model.md index f64fc0dc1..f33f4d72d 100644 --- a/docs/source/api/models/plants/plants_model.md +++ b/docs/source/api/models/plants/plants_model.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/soil.md b/docs/source/api/models/soil.md index 4b4fe8292..d599a4273 100644 --- a/docs/source/api/models/soil.md +++ b/docs/source/api/models/soil.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/soil/constants.md b/docs/source/api/models/soil/constants.md index 14f39faf6..369805872 100644 --- a/docs/source/api/models/soil/constants.md +++ b/docs/source/api/models/soil/constants.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/soil/env_factors.md b/docs/source/api/models/soil/env_factors.md index c8e87bf0d..7174f243c 100644 --- a/docs/source/api/models/soil/env_factors.md +++ b/docs/source/api/models/soil/env_factors.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/soil/pools.md b/docs/source/api/models/soil/pools.md index c6a10469e..e96d284e1 100644 --- a/docs/source/api/models/soil/pools.md +++ b/docs/source/api/models/soil/pools.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/api/models/soil/soil_model.md b/docs/source/api/models/soil/soil_model.md index 70f663546..4a5dec6b2 100644 --- a/docs/source/api/models/soil/soil_model.md +++ b/docs/source/api/models/soil/soil_model.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/bibliography.md b/docs/source/bibliography.md index 69990d868..a07fc80e6 100644 --- a/docs/source/bibliography.md +++ b/docs/source/bibliography.md @@ -8,7 +8,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 --- # Bibliography diff --git a/docs/source/development/contributing.md b/docs/source/development/contributing.md index 7fe6cf7a3..e42665cc5 100644 --- a/docs/source/development/contributing.md +++ b/docs/source/development/contributing.md @@ -8,7 +8,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 --- # Contributing to the Virtual Ecosystem diff --git a/docs/source/development/contributing/code_qa_and_typing.md b/docs/source/development/contributing/code_qa_and_typing.md index 1d1d046c1..a908e12c6 100644 --- a/docs/source/development/contributing/code_qa_and_typing.md +++ b/docs/source/development/contributing/code_qa_and_typing.md @@ -5,7 +5,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 language: python diff --git a/docs/source/development/contributing/code_testing.md b/docs/source/development/contributing/code_testing.md index d0d488897..42240b654 100644 --- a/docs/source/development/contributing/code_testing.md +++ b/docs/source/development/contributing/code_testing.md @@ -5,7 +5,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 language: python diff --git a/docs/source/development/contributing/github_actions.md b/docs/source/development/contributing/github_actions.md index 8c7c158e9..4c758fba9 100644 --- a/docs/source/development/contributing/github_actions.md +++ b/docs/source/development/contributing/github_actions.md @@ -5,7 +5,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 language: python diff --git a/docs/source/development/contributing/overview.md b/docs/source/development/contributing/overview.md index 924b7f0fa..164de29ea 100644 --- a/docs/source/development/contributing/overview.md +++ b/docs/source/development/contributing/overview.md @@ -5,7 +5,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 language: python diff --git a/docs/source/development/contributing/release_process.md b/docs/source/development/contributing/release_process.md index dda523701..5d2eb0513 100644 --- a/docs/source/development/contributing/release_process.md +++ b/docs/source/development/contributing/release_process.md @@ -5,7 +5,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 language: python diff --git a/docs/source/development/design.md b/docs/source/development/design.md index efc85b7dd..2f424f454 100644 --- a/docs/source/development/design.md +++ b/docs/source/development/design.md @@ -8,7 +8,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 --- # The design of the Virtual Ecosystem diff --git a/docs/source/development/design/core.md b/docs/source/development/design/core.md index 47b64aee6..801ebd1fe 100644 --- a/docs/source/development/design/core.md +++ b/docs/source/development/design/core.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/development/design/defining_new_models.md b/docs/source/development/design/defining_new_models.md index f399a6384..0106408c3 100644 --- a/docs/source/development/design/defining_new_models.md +++ b/docs/source/development/design/defining_new_models.md @@ -5,7 +5,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/development/documentation.md b/docs/source/development/documentation.md index e3bf311fa..41e7e8251 100644 --- a/docs/source/development/documentation.md +++ b/docs/source/development/documentation.md @@ -8,7 +8,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 --- # Documentation development diff --git a/docs/source/development/documentation/api_generation.md b/docs/source/development/documentation/api_generation.md index 77519406c..d37ec6733 100644 --- a/docs/source/development/documentation/api_generation.md +++ b/docs/source/development/documentation/api_generation.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 --- # Generating API documentation from docstrings diff --git a/docs/source/development/documentation/docstring_style.md b/docs/source/development/documentation/docstring_style.md index 8751e78d9..03d5260ad 100644 --- a/docs/source/development/documentation/docstring_style.md +++ b/docs/source/development/documentation/docstring_style.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 --- # Docstring style for the Virtual Ecosystem package diff --git a/docs/source/development/documentation/docstring_style.py b/docs/source/development/documentation/docstring_style.py index 9ed2a430b..916b968e8 100644 --- a/docs/source/development/documentation/docstring_style.py +++ b/docs/source/development/documentation/docstring_style.py @@ -7,7 +7,7 @@ # extension: .py # format_name: light # format_version: '1.5' -# jupytext_version: 1.16.4 +# jupytext_version: 1.16.5 # --- """This is the documentation for the module. It does not start with a header line diff --git a/docs/source/development/documentation/documentation.md b/docs/source/development/documentation/documentation.md index 6e83b74aa..3aba58ac6 100644 --- a/docs/source/development/documentation/documentation.md +++ b/docs/source/development/documentation/documentation.md @@ -5,7 +5,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 language: python diff --git a/docs/source/development/documentation/jupyter_notebooks.md b/docs/source/development/documentation/jupyter_notebooks.md index 11b20dc54..763470f1d 100644 --- a/docs/source/development/documentation/jupyter_notebooks.md +++ b/docs/source/development/documentation/jupyter_notebooks.md @@ -7,7 +7,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/index.md b/docs/source/index.md index 7159becb9..9f618628f 100644 --- a/docs/source/index.md +++ b/docs/source/index.md @@ -5,7 +5,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 language: python diff --git a/docs/source/using_the_ve/configuration/axes.md b/docs/source/using_the_ve/configuration/axes.md index 953d14aa7..8b3a0a02f 100644 --- a/docs/source/using_the_ve/configuration/axes.md +++ b/docs/source/using_the_ve/configuration/axes.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/using_the_ve/configuration/config.md b/docs/source/using_the_ve/configuration/config.md index b72257ae7..ffd89c638 100644 --- a/docs/source/using_the_ve/configuration/config.md +++ b/docs/source/using_the_ve/configuration/config.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/using_the_ve/configuration/constants.md b/docs/source/using_the_ve/configuration/constants.md index 3435bf556..656edabd8 100644 --- a/docs/source/using_the_ve/configuration/constants.md +++ b/docs/source/using_the_ve/configuration/constants.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/using_the_ve/configuration/grid.md b/docs/source/using_the_ve/configuration/grid.md index 181e6e53f..fe3edc8d7 100644 --- a/docs/source/using_the_ve/configuration/grid.md +++ b/docs/source/using_the_ve/configuration/grid.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/using_the_ve/data/data.md b/docs/source/using_the_ve/data/data.md index a25dd125e..f8f27edd0 100644 --- a/docs/source/using_the_ve/data/data.md +++ b/docs/source/using_the_ve/data/data.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/using_the_ve/data/notes_preprocessing.md b/docs/source/using_the_ve/data/notes_preprocessing.md index a06723048..08aa8c260 100644 --- a/docs/source/using_the_ve/data/notes_preprocessing.md +++ b/docs/source/using_the_ve/data/notes_preprocessing.md @@ -8,7 +8,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 --- # Notes on climate data pre-processing diff --git a/docs/source/using_the_ve/example_data.md b/docs/source/using_the_ve/example_data.md index 5f7d4d64e..73d4000bd 100644 --- a/docs/source/using_the_ve/example_data.md +++ b/docs/source/using_the_ve/example_data.md @@ -8,7 +8,7 @@ jupyter: extension: .md format_name: markdown format_version: '1.3' - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 --- # Virtual Ecosystem example data diff --git a/docs/source/using_the_ve/getting_started.md b/docs/source/using_the_ve/getting_started.md index 123a56667..9e638dc8d 100644 --- a/docs/source/using_the_ve/getting_started.md +++ b/docs/source/using_the_ve/getting_started.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/using_the_ve/ve_run.md b/docs/source/using_the_ve/ve_run.md index 1082c057d..8dba43507 100644 --- a/docs/source/using_the_ve/ve_run.md +++ b/docs/source/using_the_ve/ve_run.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/using_the_ve/virtual_ecosystem_in_use.md b/docs/source/using_the_ve/virtual_ecosystem_in_use.md index d44926d0b..30641a3f0 100644 --- a/docs/source/using_the_ve/virtual_ecosystem_in_use.md +++ b/docs/source/using_the_ve/virtual_ecosystem_in_use.md @@ -5,7 +5,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/implementation/abiotic_implementation.md b/docs/source/virtual_ecosystem/implementation/abiotic_implementation.md index 80cab5d3b..6f1d63231 100644 --- a/docs/source/virtual_ecosystem/implementation/abiotic_implementation.md +++ b/docs/source/virtual_ecosystem/implementation/abiotic_implementation.md @@ -5,7 +5,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/implementation/abiotic_simple_implementation.md b/docs/source/virtual_ecosystem/implementation/abiotic_simple_implementation.md index 38be2340c..4b33d10fb 100644 --- a/docs/source/virtual_ecosystem/implementation/abiotic_simple_implementation.md +++ b/docs/source/virtual_ecosystem/implementation/abiotic_simple_implementation.md @@ -5,7 +5,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/implementation/animal_implementation.md b/docs/source/virtual_ecosystem/implementation/animal_implementation.md index 7125f578f..cfcf7b12f 100644 --- a/docs/source/virtual_ecosystem/implementation/animal_implementation.md +++ b/docs/source/virtual_ecosystem/implementation/animal_implementation.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/implementation/core_components_overview.md b/docs/source/virtual_ecosystem/implementation/core_components_overview.md index 9b356d014..552abbfc4 100644 --- a/docs/source/virtual_ecosystem/implementation/core_components_overview.md +++ b/docs/source/virtual_ecosystem/implementation/core_components_overview.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/implementation/hydrology_implementation.md b/docs/source/virtual_ecosystem/implementation/hydrology_implementation.md index 167937219..2460134e0 100644 --- a/docs/source/virtual_ecosystem/implementation/hydrology_implementation.md +++ b/docs/source/virtual_ecosystem/implementation/hydrology_implementation.md @@ -5,7 +5,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/implementation/implementation.md b/docs/source/virtual_ecosystem/implementation/implementation.md index 7a73ecd0c..19b833fc8 100644 --- a/docs/source/virtual_ecosystem/implementation/implementation.md +++ b/docs/source/virtual_ecosystem/implementation/implementation.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/implementation/litter_implementation.md b/docs/source/virtual_ecosystem/implementation/litter_implementation.md index af542a575..da4df346a 100644 --- a/docs/source/virtual_ecosystem/implementation/litter_implementation.md +++ b/docs/source/virtual_ecosystem/implementation/litter_implementation.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/implementation/main_simulation.md b/docs/source/virtual_ecosystem/implementation/main_simulation.md index d0a4176a9..83e0ea762 100644 --- a/docs/source/virtual_ecosystem/implementation/main_simulation.md +++ b/docs/source/virtual_ecosystem/implementation/main_simulation.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/implementation/plants_implementation.md b/docs/source/virtual_ecosystem/implementation/plants_implementation.md index d28f567d3..6503b9a82 100644 --- a/docs/source/virtual_ecosystem/implementation/plants_implementation.md +++ b/docs/source/virtual_ecosystem/implementation/plants_implementation.md @@ -5,7 +5,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/implementation/science_model_overview.md b/docs/source/virtual_ecosystem/implementation/science_model_overview.md index 67f224fb3..265b8830a 100644 --- a/docs/source/virtual_ecosystem/implementation/science_model_overview.md +++ b/docs/source/virtual_ecosystem/implementation/science_model_overview.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/implementation/soil_implementation.md b/docs/source/virtual_ecosystem/implementation/soil_implementation.md index 3ae9ed658..85142ab18 100644 --- a/docs/source/virtual_ecosystem/implementation/soil_implementation.md +++ b/docs/source/virtual_ecosystem/implementation/soil_implementation.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/implementation/var_generator.py b/docs/source/virtual_ecosystem/implementation/var_generator.py index e9378afba..68d743ada 100644 --- a/docs/source/virtual_ecosystem/implementation/var_generator.py +++ b/docs/source/virtual_ecosystem/implementation/var_generator.py @@ -7,7 +7,7 @@ # extension: .py # format_name: light # format_version: '1.5' -# jupytext_version: 1.16.4 +# jupytext_version: 1.16.5 # --- """Utility functions to generate model variable listings.""" diff --git a/docs/source/virtual_ecosystem/implementation/variables.md b/docs/source/virtual_ecosystem/implementation/variables.md index 1232c12d9..d19e26ac5 100644 --- a/docs/source/virtual_ecosystem/implementation/variables.md +++ b/docs/source/virtual_ecosystem/implementation/variables.md @@ -5,7 +5,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/theory/abiotic_theory.md b/docs/source/virtual_ecosystem/theory/abiotic_theory.md index 50acb482f..efad0295b 100644 --- a/docs/source/virtual_ecosystem/theory/abiotic_theory.md +++ b/docs/source/virtual_ecosystem/theory/abiotic_theory.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/theory/animals/animal_theory.md b/docs/source/virtual_ecosystem/theory/animals/animal_theory.md index 9dd5837b1..11170c39d 100644 --- a/docs/source/virtual_ecosystem/theory/animals/animal_theory.md +++ b/docs/source/virtual_ecosystem/theory/animals/animal_theory.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/theory/animals/carcasses_and_excrement.md b/docs/source/virtual_ecosystem/theory/animals/carcasses_and_excrement.md index 2a0e34629..83effc1c5 100644 --- a/docs/source/virtual_ecosystem/theory/animals/carcasses_and_excrement.md +++ b/docs/source/virtual_ecosystem/theory/animals/carcasses_and_excrement.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/theory/hydrology_theory.md b/docs/source/virtual_ecosystem/theory/hydrology_theory.md index 0347c69e2..1b0d7a970 100644 --- a/docs/source/virtual_ecosystem/theory/hydrology_theory.md +++ b/docs/source/virtual_ecosystem/theory/hydrology_theory.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/theory/microclimate_theory.md b/docs/source/virtual_ecosystem/theory/microclimate_theory.md index c0d2ab2f3..02acde895 100644 --- a/docs/source/virtual_ecosystem/theory/microclimate_theory.md +++ b/docs/source/virtual_ecosystem/theory/microclimate_theory.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/theory/plant_theory.md b/docs/source/virtual_ecosystem/theory/plant_theory.md index 538a7f0cb..9c769f5c0 100644 --- a/docs/source/virtual_ecosystem/theory/plant_theory.md +++ b/docs/source/virtual_ecosystem/theory/plant_theory.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/theory/soil/environmental_links.md b/docs/source/virtual_ecosystem/theory/soil/environmental_links.md index 0cb482447..ccdd73ef5 100644 --- a/docs/source/virtual_ecosystem/theory/soil/environmental_links.md +++ b/docs/source/virtual_ecosystem/theory/soil/environmental_links.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/theory/soil/litter_theory.md b/docs/source/virtual_ecosystem/theory/soil/litter_theory.md index 9006a4299..4b1e13606 100644 --- a/docs/source/virtual_ecosystem/theory/soil/litter_theory.md +++ b/docs/source/virtual_ecosystem/theory/soil/litter_theory.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/theory/soil/soil_theory.md b/docs/source/virtual_ecosystem/theory/soil/soil_theory.md index 4b0057fe9..824c30d80 100644 --- a/docs/source/virtual_ecosystem/theory/soil/soil_theory.md +++ b/docs/source/virtual_ecosystem/theory/soil/soil_theory.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/theory/soil/summary.md b/docs/source/virtual_ecosystem/theory/soil/summary.md index 1c8b0c243..d573d6d43 100644 --- a/docs/source/virtual_ecosystem/theory/soil/summary.md +++ b/docs/source/virtual_ecosystem/theory/soil/summary.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python diff --git a/docs/source/virtual_ecosystem/theory/theory.md b/docs/source/virtual_ecosystem/theory/theory.md index f3eef69e2..fe04a083c 100644 --- a/docs/source/virtual_ecosystem/theory/theory.md +++ b/docs/source/virtual_ecosystem/theory/theory.md @@ -6,7 +6,7 @@ jupytext: extension: .md format_name: myst format_version: 0.13 - jupytext_version: 1.16.4 + jupytext_version: 1.16.5 kernelspec: display_name: Python 3 (ipykernel) language: python