cmake error #8

XiSheng1998 · 2019-10-08T07:45:13Z

I downloaded Rocstar-legacy file and followed the instruction in RocstarQuickStart, downloaded all the required tpl and set all the environment variables, and I typed:

cmake $ROCSTAR_SOURCE

error occurred:

CMake Error at CMakeLists.txt:31 (add_subdirectory):
  The source directory

    /usr/local/src/Rocstar-legacy-master/IRAD

  does not contain a CMakeLists.txt file.


-- A library with BLAS API found.
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
CMake Error at CMakeLists.txt:97 (MESSAGE):
  Doxygen is needed to build the documentation.


CMake Error: The following variables are used in this project, but they are set to NOTFOUND.
Please set them or make sure they are set and tested correctly in the CMake files:
HDF5_LIB

However, I installed libhdf5-dev but the cmake error still saying HDF5_LIB cannot be founded.
The Doxygen site http://illinoisrocstar.github.io/Rocstar/ also cannot be found, site not founded 404.
According to IRAD, IRAD file in Rocstar-legacy is empty, I downloaded IRAD file in IRAD-master and copy it to Rocstar-legacy/IRAD and cmake, the error occurs:

-- No build type selected, default to Release
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
CMake Error at IRAD/CMakeLists.txt:74 (MESSAGE):
  Doxygen is needed to build the documentation.


-- Configuring incomplete, errors occurred!
See also "/usr/local/src/Rocstar-legacy-master/CMakeFiles/CMakeOutput.log".
See also "/usr/local/src/Rocstar-legacy-master/CMakeFiles/CMakeError.log".

It seems that I need to download Doxygen file in http://illinoisrocstar.github.io/Rocstar/, but the site cannot be found.

The text was updated successfully, but these errors were encountered:

XiSheng1998 · 2019-10-10T07:53:35Z

OK, I solved Doxygen issue, just by installed doxygen. but it still saying HDF5_LIB and METIS_INC are set to NOTFOUND, I installed libhdf5 and metis 4.0.3, but still doesn't work.

msafdari1234 · 2019-10-10T12:47:48Z

Seems like your HDF5 and METIS libraries are not installed in the standard system path. You can manually specify path in your cmake cache. In the top build directory, issue "ccmake .", find "HDF5_LIB" and "METIS_INC" variables and manually set them.

…

On Thu, Oct 10, 2019 at 2:53 AM XiSheng1998 ***@***.***> wrote: OK, I solved Doxygen issue, just by installed doxygen. but it still saying HDF5_LIB and METIS_INC are set to NOTFOUND, I installed libhdf5 and metis 4.0.3, but still doesn't work. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#8?email_source=notifications&email_token=ABR6Z7CPBIHXGZ47LFT5WQ3QN3NQHA5CNFSM4I6OEWT2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEA3IY7A#issuecomment-540445820>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABR6Z7DVNIIXEESXQJIO53LQN3NQHANCNFSM4I6OEWTQ> .

multiplemonomials · 2019-10-19T07:16:06Z

If you need it @XiSheng1998 we at RPL created a fork of Rocstar to address some of the CMake build system issues. Check it out here: https://github.com/USCRPL/Rocstar . Among other things it includes a bundled version of Metis, and removes the dependency on HDF5 (nothing actually uses it!).

XiSheng1998 · 2019-10-28T13:01:41Z

Seems like your HDF5 and METIS libraries are not installed in the standard
system path. You can manually specify path in your cmake cache. In the top
build directory, issue "ccmake .", find "HDF5_LIB" and "METIS_INC"
variables and manually set them.
…

OK, finally I solved the metis-notfound problem and HDF5-LIB-notfound problem. And cmake processing with no errors but a warning:

root@ubuntu:/usr/local/src# cmake $ROCSTAR_SOURCE
-- No build type selected, default to Release
-- A library with BLAS API found.
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Configuring done
CMake Warning (dev) at Rocmop/CMakeLists.txt:62 (add_dependencies):
  Policy CMP0046 is not set: Error on non-existent dependency in
  add_dependencies.  Run "cmake --help-policy CMP0046" for policy details.
  Use the cmake_policy command to set the policy and suppress this warning.

  The dependency target "MSQ_MV" of target "Rocmop" does not exist.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Generating done
-- Build files have been written to: /usr/local/src/Rocstar-legacy-master

however, when I try to run make -j, error occured:

In file included from /usr/local/src/Rocstar-legacy-master/IRAD/src/COMM.C:6:0:
/usr/local/src/Rocstar-legacy-master/IRAD/include/COMM.H: In member function ‘int IRAD::Comm::CommunicatorObject::GatherMO(std::vector<DataType>&, std::vector<DataType>&, std::vector<int>&, int)’:
/usr/local/src/Rocstar-legacy-master/IRAD/include/COMM.H:482:12: error: no match for ‘operator+=’ (operand types are ‘int’ and ‘__gnu_cxx::__normal_iterator<int*, std::vector<int> >’)
      nrecv += nsi++;
      ~~~~~~^~~~~~~~
/usr/local/src/Rocstar-legacy-master/IRAD/include/COMM.H: In member function ‘int IRAD::Comm::CommunicatorObject::AllGatherMO(std::vector<DataType>&, std::vector<DataType>&, std::vector<int>&, int)’:
/usr/local/src/Rocstar-legacy-master/IRAD/include/COMM.H:529:12: error: no match for ‘operator+=’ (operand types are ‘int’ and ‘__gnu_cxx::__normal_iterator<int*, std::vector<int> >’)
      nrecv += nsi++;
      ~~~~~~^~~~~~~~
/usr/local/src/Rocstar-legacy-master/IRAD/include/COMM.H: In member function ‘int IRAD::Comm::CommunicatorObject::GatherMOV(std::vector<DataType>&, std::vector<DataType>&, std::vector<int>&, int)’:
/usr/local/src/Rocstar-legacy-master/IRAD/include/COMM.H:561:12: error: no match for ‘operator+=’ (operand types are ‘int’ and ‘__gnu_cxx::__normal_iterator<int*, std::vector<int> >’)
      nrecv += nsi++;
      ~~~~~~^~~~~~~~
/usr/local/src/Rocstar-legacy-master/IRAD/include/COMM.H: In member function ‘int IRAD::Comm::CommunicatorObject::AllGatherMOV(std::vector<DataType>&, std::vector<DataType>&, std::vector<int>&, int)’:
/usr/local/src/Rocstar-legacy-master/IRAD/include/COMM.H:593:12: error: no match for ‘operator+=’ (operand types are ‘int’ and ‘__gnu_cxx::__normal_iterator<int*, std::vector<int> >’)
      nrecv += nsi++;
      ~~~~~~^~~~~~~~

IRAD/CMakeFiles/IRAD.dir/build.make:182: recipe for target 'IRAD/CMakeFiles/IRAD.dir/src/COMM.C.o' failed
make[2]: *** [IRAD/CMakeFiles/IRAD.dir/src/COMM.C.o] Error 1
CMakeFiles/Makefile2:1146: recipe for target 'IRAD/CMakeFiles/IRAD.dir/all' failed
make[1]: *** [IRAD/CMakeFiles/IRAD.dir/all] Error 2
Makefile:162: recipe for target 'all' failed
make: *** [all] Error 2

It seems that something's wrong with IRAD, the cotent of /Rocstar-legacy/IRAD folder was downloaded from https://github.com/IllinoisRocstar/IRAD. Because there's something wrong with my Linux git submodule command, I have to download IRAD manually and Unzip to /Rocstar-legacy/IRAD folder, and then the error occurs.

XiSheng1998 · 2019-10-28T13:11:12Z

I also tried to make IRAD independently, cmake process seems ok but error occurs when it comes to make process:

root@ubuntu:/usr/local/src/irad# make
Scanning dependencies of target IRAD
[  4%] Building CXX object CMakeFiles/IRAD.dir/src/ComLine.C.o
[  9%] Building CXX object CMakeFiles/IRAD.dir/src/Parameters.C.o
[ 14%] Building CXX object CMakeFiles/IRAD.dir/src/Configuration.C.o
[ 19%] Building CXX object CMakeFiles/IRAD.dir/src/Profiler.C.o
[ 23%] Building CXX object CMakeFiles/IRAD.dir/src/UnixUtils.C.o
[ 28%] Building CXX object CMakeFiles/IRAD.dir/src/COMM.C.o
In file included from /usr/local/src/IRAD/src/COMM.C:6:0:
/usr/local/src/IRAD/include/COMM.H: In member function ‘int IRAD::Comm::CommunicatorObject::GatherMO(std::vector<DataType>&, std::vector<DataType>&, std::vector<int>&, int)’:
/usr/local/src/IRAD/include/COMM.H:482:12: error: no match for ‘operator+=’ (operand types are ‘int’ and ‘__gnu_cxx::__normal_iterator<int*, std::vector<int> >’)
      nrecv += nsi++;
      ~~~~~~^~~~~~~~
/usr/local/src/IRAD/include/COMM.H: In member function ‘int IRAD::Comm::CommunicatorObject::AllGatherMO(std::vector<DataType>&, std::vector<DataType>&, std::vector<int>&, int)’:
/usr/local/src/IRAD/include/COMM.H:529:12: error: no match for ‘operator+=’ (operand types are ‘int’ and ‘__gnu_cxx::__normal_iterator<int*, std::vector<int> >’)
      nrecv += nsi++;
      ~~~~~~^~~~~~~~
/usr/local/src/IRAD/include/COMM.H: In member function ‘int IRAD::Comm::CommunicatorObject::GatherMOV(std::vector<DataType>&, std::vector<DataType>&, std::vector<int>&, int)’:
/usr/local/src/IRAD/include/COMM.H:561:12: error: no match for ‘operator+=’ (operand types are ‘int’ and ‘__gnu_cxx::__normal_iterator<int*, std::vector<int> >’)
      nrecv += nsi++;
      ~~~~~~^~~~~~~~
/usr/local/src/IRAD/include/COMM.H: In member function ‘int IRAD::Comm::CommunicatorObject::AllGatherMOV(std::vector<DataType>&, std::vector<DataType>&, std::vector<int>&, int)’:
/usr/local/src/IRAD/include/COMM.H:593:12: error: no match for ‘operator+=’ (operand types are ‘int’ and ‘__gnu_cxx::__normal_iterator<int*, std::vector<int> >’)
      nrecv += nsi++;
      ~~~~~~^~~~~~~~
CMakeFiles/IRAD.dir/build.make:182: recipe for target 'CMakeFiles/IRAD.dir/src/COMM.C.o' failed
make[2]: *** [CMakeFiles/IRAD.dir/src/COMM.C.o] Error 1
CMakeFiles/Makefile2:493: recipe for target 'CMakeFiles/IRAD.dir/all' failed
make[1]: *** [CMakeFiles/IRAD.dir/all] Error 2
Makefile:140: recipe for target 'all' failed
make: *** [all] Error 2

msafdari1234 · 2019-10-28T14:25:10Z

I suspect you are using a relatively modern compiler. IRAD is old and not compatible with modern compilers. We have noticed these issues and fixed them in our new IMPACT release. I just updated our IMPACT project. The project no longer relies on IRAD (which will be no longer supported) and it is compatible with the latest gnu compilers. We are upgrading Rocstar build system to a great deal soon. It will be ready for public release in next few weeks.

Meanwhile, please go ahead and checkout our new IMPACT release, build it and use that for Rocstar (not this legacy version, try the new version). That should address these compile issues.

XiSheng1998 · 2019-10-28T14:53:42Z

Additionally, when I use ccmake $ROCSTAR_SOURCE, and I found that BLOCKSOLVE_INC and BLOCKSOLVE_LIB was set to notfound, I checked Rocburn/CMakeList.txt, and found:

find_library(BLOCKSOLVE_LIBRARY blocksolve95)
find_path(BLO	CKSOLVE_INC blocksolve95.h)

But I could found any information of blocksolve library. Is there any way to download this lib?

msafdari1234 · 2019-10-28T15:45:41Z

Blocksolve is not used in the project, so you are safe. Rocstar build system soon will be improved in new release and these issue will be fixed. Once again, none of the new fixes will be released under Rocstar-legacy and I recommend you to switch to Rocstar.

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cmake error #8

cmake error #8

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XiSheng1998 commented Oct 28, 2019

msafdari1234 commented Oct 28, 2019

cmake error #8

cmake error #8

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