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Trouble installing from conda. #5

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noahssarcastic opened this issue Feb 10, 2022 · 3 comments
Open

Trouble installing from conda. #5

noahssarcastic opened this issue Feb 10, 2022 · 3 comments
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@agondolo

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@noahssarcastic
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I tried installing from conda using miniconda 4.11.0 using the command it recommends on the conda page.

conda install -c illinoisrocstar promesh

I got the following error.

(base) ______@____:~$ conda install -c illinoisrocstar promesh
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: / 
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed                                                                          

UnsatisfiableError: The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

Package libstdcxx-ng conflicts for:
promesh -> libstdcxx-ng[version='>=11.2.0']
python=3.9 -> libstdcxx-ng[version='>=7.3.0|>=7.5.0']

Package libgcc-ng conflicts for:
python=3.9 -> libgcc-ng[version='>=7.3.0|>=7.5.0']
python=3.9 -> zlib[version='>=1.2.11,<1.3.0a0'] -> libgcc-ng[version='>=7.2.0']The following specifications were found to be incompatible with your system:

  - feature:/linux-64::__glibc==2.31=0
  - feature:|@/linux-64::__glibc==2.31=0

Your installed version is: 2.31
@noahssarcastic
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It looks like the issue has to do with my Python version. I'm using 3.9 in my base environment. I tried making an environment based on the package by running the following.

conda create -n promesh -c illinoisrocstar promesh

Then I got this error.

(base) ____@___:~$ conda create -n promesh -c illinoisrocstar promesh
Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: / 
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed

PackagesNotFoundError: The following packages are not available from current channels:

  - libstdcxx-ng[version='>=11.2.0']

Current channels:

  - https://conda.anaconda.org/illinoisrocstar/linux-64
  - https://conda.anaconda.org/illinoisrocstar/noarch
  - https://repo.anaconda.com/pkgs/main/linux-64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/r/linux-64
  - https://repo.anaconda.com/pkgs/r/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.

@noahssarcastic
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I was able to find that package from conda-forge and tried installing using both channels and that appears to install fine but then fails at run-time.

(base) ________:~$ conda install -c conda-forge -c illinoisrocstar promesh
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: done

## Package Plan ##

  environment location: /home/users/niniguez/miniconda3

  added / updated specs:
    - promesh


The following NEW packages will be INSTALLED:

  alsa-lib           conda-forge/linux-64::alsa-lib-1.2.3-h516909a_0
  aom                conda-forge/linux-64::aom-3.2.0-h9c3ff4c_2
  boost-cpp          conda-forge/linux-64::boost-cpp-1.74.0-h312852a_4
  bzip2              conda-forge/linux-64::bzip2-1.0.8-h7f98852_4
  c-ares             conda-forge/linux-64::c-ares-1.18.1-h7f98852_0
  curl               conda-forge/linux-64::curl-7.81.0-h2574ce0_0
  dbus               conda-forge/linux-64::dbus-1.13.6-h48d8840_2
  double-conversion  conda-forge/linux-64::double-conversion-3.1.7-h9c3ff4c_0
  eigen              conda-forge/linux-64::eigen-3.4.0-h4bd325d_0
  expat              conda-forge/linux-64::expat-2.4.4-h9c3ff4c_0
  ffmpeg             conda-forge/linux-64::ffmpeg-4.4.1-h6987444_0
  fontconfig         conda-forge/linux-64::fontconfig-2.13.96-ha180cfb_0
  freetype           conda-forge/linux-64::freetype-2.10.4-h0708190_1
  gettext            conda-forge/linux-64::gettext-0.19.8.1-h0b5b191_1005
  gl2ps              conda-forge/linux-64::gl2ps-1.4.2-h0708190_0
  glew               conda-forge/linux-64::glew-2.1.0-h9c3ff4c_2
  glib               conda-forge/linux-64::glib-2.68.4-h9c3ff4c_0
  glib-tools         conda-forge/linux-64::glib-tools-2.68.4-h9c3ff4c_0
  gmp                conda-forge/linux-64::gmp-6.2.1-h58526e2_0
  gnutls             conda-forge/linux-64::gnutls-3.6.13-h85f3911_1
  gst-plugins-base   conda-forge/linux-64::gst-plugins-base-1.18.5-hf529b03_0
  gstreamer          conda-forge/linux-64::gstreamer-1.18.5-h76c114f_0
  hdf4               conda-forge/linux-64::hdf4-4.2.15-h10796ff_3
  hdf5               conda-forge/linux-64::hdf5-1.12.1-nompi_h2750804_103
  icu                conda-forge/linux-64::icu-68.2-h9c3ff4c_0
  jbig               conda-forge/linux-64::jbig-2.1-h7f98852_2003
  jpeg               conda-forge/linux-64::jpeg-9e-h7f98852_0
  jsoncpp            conda-forge/linux-64::jsoncpp-1.9.4-h4bd325d_3
  krb5               conda-forge/linux-64::krb5-1.19.2-hcc1bbae_3
  lame               conda-forge/linux-64::lame-3.100-h7f98852_1001
  lerc               conda-forge/linux-64::lerc-3.0-h9c3ff4c_0
  libclang           conda-forge/linux-64::libclang-11.1.0-default_ha53f305_1
  libcurl            conda-forge/linux-64::libcurl-7.81.0-h2574ce0_0
  libdeflate         conda-forge/linux-64::libdeflate-1.8-h7f98852_0
  libdrm             conda-forge/linux-64::libdrm-2.4.109-h7f98852_0
  libdrm-cos6-x86_64 conda-forge/noarch::libdrm-cos6-x86_64-2.4.65-h9b0a68f_105
  libedit            conda-forge/linux-64::libedit-3.1.20191231-he28a2e2_2
  libev              conda-forge/linux-64::libev-4.33-h516909a_1
  libevent           conda-forge/linux-64::libevent-2.1.10-h9b69904_4
  libgfortran-ng     conda-forge/linux-64::libgfortran-ng-11.2.0-h69a702a_12
  libgfortran5       conda-forge/linux-64::libgfortran5-11.2.0-h5c6108e_12
  libglib            conda-forge/linux-64::libglib-2.68.4-h3e27bee_0
  libglu             conda-forge/linux-64::libglu-9.0.0-he1b5a44_1001
  libiconv           conda-forge/linux-64::libiconv-1.16-h516909a_0
  libllvm11          conda-forge/linux-64::libllvm11-11.1.0-hf817b99_2
  libnetcdf          conda-forge/linux-64::libnetcdf-4.8.1-nompi_hb3fd0d9_101
  libnghttp2         conda-forge/linux-64::libnghttp2-1.46.0-h812cca2_0
  libogg             conda-forge/linux-64::libogg-1.3.4-h7f98852_1
  libopus            conda-forge/linux-64::libopus-1.3.1-h7f98852_1
  libpciaccess       conda-forge/linux-64::libpciaccess-0.16-h516909a_0
  libpng             conda-forge/linux-64::libpng-1.6.37-h21135ba_2
  libpq              conda-forge/linux-64::libpq-13.5-hd57d9b9_1
  libssh2            conda-forge/linux-64::libssh2-1.10.0-ha56f1ee_2
  libtheora          conda-forge/linux-64::libtheora-1.1.1-h7f98852_1005
  libtiff            conda-forge/linux-64::libtiff-4.3.0-h6f004c6_2
  libuuid            conda-forge/linux-64::libuuid-2.32.1-h7f98852_1000
  libva              conda-forge/linux-64::libva-2.13.0-h7f98852_2
  libvorbis          conda-forge/linux-64::libvorbis-1.3.7-h9c3ff4c_0
  libvpx             conda-forge/linux-64::libvpx-1.11.0-h9c3ff4c_3
  libwebp-base       conda-forge/linux-64::libwebp-base-1.2.2-h7f98852_1
  libx11-common-cos~ conda-forge/noarch::libx11-common-cos6-x86_64-1.6.4-h9b0a68f_105
  libx11-cos6-x86_64 conda-forge/noarch::libx11-cos6-x86_64-1.6.4-h9b0a68f_105
  libxcb             conda-forge/linux-64::libxcb-1.13-h7f98852_1004
  libxkbcommon       conda-forge/linux-64::libxkbcommon-1.0.3-he3ba5ed_0
  libxml2            conda-forge/linux-64::libxml2-2.9.12-h72842e0_0
  libzip             conda-forge/linux-64::libzip-1.8.0-h4de3113_1
  libzlib            conda-forge/linux-64::libzlib-1.2.11-h36c2ea0_1013
  llvm-openmp        conda-forge/linux-64::llvm-openmp-13.0.1-hf817b99_0
  loguru             conda-forge/linux-64::loguru-0.5.3-py39hf3d152e_3
  lz4-c              conda-forge/linux-64::lz4-c-1.9.3-h9c3ff4c_1
  mesa-dri-drivers-~ conda-forge/noarch::mesa-dri-drivers-cos6-x86_64-11.0.7-h9b0a68f_105
  mesa-dri1-drivers~ conda-forge/noarch::mesa-dri1-drivers-cos6-x86_64-7.11-h9b0a68f_105
  mesa-libgl-cos6-x~ conda-forge/noarch::mesa-libgl-cos6-x86_64-11.0.7-h9b0a68f_105
  mesa-libgl-devel-~ conda-forge/noarch::mesa-libgl-devel-cos6-x86_64-11.0.7-h9b0a68f_105
  mysql-common       conda-forge/linux-64::mysql-common-8.0.28-ha770c72_0
  mysql-libs         conda-forge/linux-64::mysql-libs-8.0.28-hfa10184_0
  netgen             illinoisrocstar/linux-64::netgen-6.2.1910-no_python_h2bc3f7f_1
  nettle             conda-forge/linux-64::nettle-3.6-he412f7d_0
  nspr               conda-forge/linux-64::nspr-4.32-h9c3ff4c_1
  nss                conda-forge/linux-64::nss-3.74-hb5efdd6_0
  occt               conda-forge/linux-64::occt-7.4.0-h9121d39_3
  openh264           conda-forge/linux-64::openh264-2.1.1-h780b84a_0
  pcre               conda-forge/linux-64::pcre-8.45-h9c3ff4c_0
  pip                conda-forge/noarch::pip-22.0.3-pyhd8ed1ab_0
  proj               conda-forge/linux-64::proj-8.2.0-h277dcde_0
  promesh            illinoisrocstar/linux-64::promesh-0.63.0-vtk91_h2bc3f7f_1
  pthread-stubs      conda-forge/linux-64::pthread-stubs-0.4-h36c2ea0_1001
  pugixml            conda-forge/linux-64::pugixml-1.11.4-h9c3ff4c_0
  python_abi         conda-forge/linux-64::python_abi-3.9-2_cp39
  qt                 conda-forge/linux-64::qt-5.12.9-hda022c4_4
  svt-av1            conda-forge/linux-64::svt-av1-0.9.0-h9c3ff4c_0
  tbb                conda-forge/linux-64::tbb-2020.2-h4bd325d_4
  tbb-devel          conda-forge/linux-64::tbb-devel-2020.2-h4bd325d_4
  utfcpp             conda-forge/linux-64::utfcpp-3.2.1-ha770c72_0
  vtk                conda-forge/linux-64::vtk-9.1.0-no_osmesa_py39hb107cf0_101
  wheel              conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
  x264               conda-forge/linux-64::x264-1!161.3030-h7f98852_1
  x265               conda-forge/linux-64::x265-3.5-h4bd325d_1
  xorg-fixesproto    conda-forge/linux-64::xorg-fixesproto-5.0-h7f98852_1002
  xorg-kbproto       conda-forge/linux-64::xorg-kbproto-1.0.7-h7f98852_1002
  xorg-libice        conda-forge/linux-64::xorg-libice-1.0.10-h7f98852_0
  xorg-libsm         conda-forge/linux-64::xorg-libsm-1.2.3-hd9c2040_1000
  xorg-libx11        conda-forge/linux-64::xorg-libx11-1.7.2-h7f98852_0
  xorg-libxau        conda-forge/linux-64::xorg-libxau-1.0.9-h7f98852_0
  xorg-libxdmcp      conda-forge/linux-64::xorg-libxdmcp-1.1.3-h7f98852_0
  xorg-libxext       conda-forge/linux-64::xorg-libxext-1.3.4-h7f98852_1
  xorg-libxfixes     conda-forge/linux-64::xorg-libxfixes-5.0.3-h7f98852_1004
  xorg-libxt         conda-forge/linux-64::xorg-libxt-1.2.1-h7f98852_2
  xorg-xextproto     conda-forge/linux-64::xorg-xextproto-7.3.0-h7f98852_1002
  xorg-xproto        conda-forge/linux-64::xorg-xproto-7.0.31-h7f98852_1007
  zstd               conda-forge/linux-64::zstd-1.5.2-ha95c52a_0

The following packages will be REMOVED:

  libgomp-9.3.0-h5101ec6_17

The following packages will be UPDATED:

  libgcc-ng          pkgs/main::libgcc-ng-9.3.0-h5101ec6_17 --> conda-forge::libgcc-ng-11.2.0-h1d223b6_12
  libstdcxx-ng       pkgs/main::libstdcxx-ng-9.3.0-hd4cf53~ --> conda-forge::libstdcxx-ng-11.2.0-he4da1e4_12
  zlib                    pkgs/main::zlib-1.2.11-h7f8727e_4 --> conda-forge::zlib-1.2.11-h36c2ea0_1013

The following packages will be SUPERSEDED by a higher-priority channel:

  _libgcc_mutex           pkgs/main::_libgcc_mutex-0.1-main --> conda-forge::_libgcc_mutex-0.1-conda_forge
  _openmp_mutex          pkgs/main::_openmp_mutex-4.5-1_gnu --> conda-forge::_openmp_mutex-4.5-1_llvm
  ca-certificates    pkgs/main::ca-certificates-2021.10.26~ --> conda-forge::ca-certificates-2021.10.8-ha878542_0
  certifi            pkgs/main::certifi-2021.10.8-py39h06a~ --> conda-forge::certifi-2021.10.8-py39hf3d152e_1
  conda              pkgs/main::conda-4.11.0-py39h06a4308_0 --> conda-forge::conda-4.11.0-py39hf3d152e_0
  openssl              pkgs/main::openssl-1.1.1m-h7f8727e_0 --> conda-forge::openssl-1.1.1l-h7f98852_0


Proceed ([y]/n)? 

Preparing transaction: done
Verifying transaction: done
Executing transaction: done
(base) ________:~$ nemosysRun
nemosysRun: error while loading shared libraries: libicuuc.so.69: cannot open shared object file: No such file or directory

@noahssarcastic
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I was finally able to get this to work by building in a new environment and using the conda-forge channel. This worked for me:

conda create -y -n promesh -c conda-forge -c illinoisrocstar promesh

(base) _______:~$ conda create -y -n promesh -c conda-forge -c illinoisrocstar promesh
Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: done

## Package Plan ##

  environment location: /home/users/niniguez/miniconda3/envs/promesh

  added / updated specs:
    - promesh


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    _openmp_mutex-4.5          |            1_gnu          22 KB  conda-forge
    ------------------------------------------------------------
                                           Total:          22 KB

The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-1_gnu
  alsa-lib           conda-forge/linux-64::alsa-lib-1.2.3-h516909a_0
  aom                conda-forge/linux-64::aom-3.2.0-h9c3ff4c_2
  boost-cpp          conda-forge/linux-64::boost-cpp-1.74.0-h6cacc03_7
  bzip2              conda-forge/linux-64::bzip2-1.0.8-h7f98852_4
  c-ares             conda-forge/linux-64::c-ares-1.18.1-h7f98852_0
  ca-certificates    conda-forge/linux-64::ca-certificates-2021.10.8-ha878542_0
  curl               conda-forge/linux-64::curl-7.81.0-h2574ce0_0
  dbus               conda-forge/linux-64::dbus-1.13.6-h5008d03_3
  double-conversion  conda-forge/linux-64::double-conversion-3.1.7-h9c3ff4c_0
  eigen              conda-forge/linux-64::eigen-3.4.0-h4bd325d_0
  expat              conda-forge/linux-64::expat-2.4.4-h9c3ff4c_0
  ffmpeg             conda-forge/linux-64::ffmpeg-4.4.1-h6987444_0
  font-ttf-dejavu-s~ conda-forge/noarch::font-ttf-dejavu-sans-mono-2.37-hab24e00_0
  font-ttf-inconsol~ conda-forge/noarch::font-ttf-inconsolata-3.000-h77eed37_0
  font-ttf-source-c~ conda-forge/noarch::font-ttf-source-code-pro-2.038-h77eed37_0
  font-ttf-ubuntu    conda-forge/noarch::font-ttf-ubuntu-0.83-hab24e00_0
  fontconfig         conda-forge/linux-64::fontconfig-2.13.96-ha180cfb_0
  fonts-conda-ecosy~ conda-forge/noarch::fonts-conda-ecosystem-1-0
  fonts-conda-forge  conda-forge/noarch::fonts-conda-forge-1-0
  freetype           conda-forge/linux-64::freetype-2.10.4-h0708190_1
  gettext            conda-forge/linux-64::gettext-0.19.8.1-h73d1719_1008
  gl2ps              conda-forge/linux-64::gl2ps-1.4.2-h0708190_0
  glew               conda-forge/linux-64::glew-2.1.0-h9c3ff4c_2
  gmp                conda-forge/linux-64::gmp-6.2.1-h58526e2_0
  gnutls             conda-forge/linux-64::gnutls-3.6.13-h85f3911_1
  gst-plugins-base   conda-forge/linux-64::gst-plugins-base-1.18.5-hf529b03_3
  gstreamer          conda-forge/linux-64::gstreamer-1.18.5-h9f60fe5_3
  hdf4               conda-forge/linux-64::hdf4-4.2.15-h10796ff_3
  hdf5               conda-forge/linux-64::hdf5-1.12.1-nompi_h2750804_103
  icu                conda-forge/linux-64::icu-69.1-h9c3ff4c_0
  jbig               conda-forge/linux-64::jbig-2.1-h7f98852_2003
  jpeg               conda-forge/linux-64::jpeg-9e-h7f98852_0
  jsoncpp            conda-forge/linux-64::jsoncpp-1.9.4-h4bd325d_3
  krb5               conda-forge/linux-64::krb5-1.19.2-hcc1bbae_3
  lame               conda-forge/linux-64::lame-3.100-h7f98852_1001
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.36.1-hea4e1c9_2
  lerc               conda-forge/linux-64::lerc-3.0-h9c3ff4c_0
  libclang           conda-forge/linux-64::libclang-13.0.1-default_hc23dcda_0
  libcurl            conda-forge/linux-64::libcurl-7.81.0-h2574ce0_0
  libdeflate         conda-forge/linux-64::libdeflate-1.8-h7f98852_0
  libdrm             conda-forge/linux-64::libdrm-2.4.109-h7f98852_0
  libdrm-cos6-x86_64 conda-forge/noarch::libdrm-cos6-x86_64-2.4.65-h9b0a68f_105
  libedit            conda-forge/linux-64::libedit-3.1.20191231-he28a2e2_2
  libev              conda-forge/linux-64::libev-4.33-h516909a_1
  libevent           conda-forge/linux-64::libevent-2.1.10-h9b69904_4
  libffi             conda-forge/linux-64::libffi-3.4.2-h7f98852_5
  libgcc-ng          conda-forge/linux-64::libgcc-ng-11.2.0-h1d223b6_12
  libgfortran-ng     conda-forge/linux-64::libgfortran-ng-11.2.0-h69a702a_12
  libgfortran5       conda-forge/linux-64::libgfortran5-11.2.0-h5c6108e_12
  libglib            conda-forge/linux-64::libglib-2.70.2-h174f98d_2
  libglu             conda-forge/linux-64::libglu-9.0.0-he1b5a44_1001
  libgomp            conda-forge/linux-64::libgomp-11.2.0-h1d223b6_12
  libiconv           conda-forge/linux-64::libiconv-1.16-h516909a_0
  libllvm13          conda-forge/linux-64::libllvm13-13.0.1-hf817b99_0
  libnetcdf          conda-forge/linux-64::libnetcdf-4.8.1-nompi_hb3fd0d9_101
  libnghttp2         conda-forge/linux-64::libnghttp2-1.46.0-h812cca2_0
  libnsl             conda-forge/linux-64::libnsl-2.0.0-h7f98852_0
  libogg             conda-forge/linux-64::libogg-1.3.4-h7f98852_1
  libopus            conda-forge/linux-64::libopus-1.3.1-h7f98852_1
  libpciaccess       conda-forge/linux-64::libpciaccess-0.16-h516909a_0
  libpng             conda-forge/linux-64::libpng-1.6.37-h21135ba_2
  libpq              conda-forge/linux-64::libpq-14.1-hd57d9b9_1
  libssh2            conda-forge/linux-64::libssh2-1.10.0-ha56f1ee_2
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-11.2.0-he4da1e4_12
  libtheora          conda-forge/linux-64::libtheora-1.1.1-h7f98852_1005
  libtiff            conda-forge/linux-64::libtiff-4.3.0-h6f004c6_2
  libuuid            conda-forge/linux-64::libuuid-2.32.1-h7f98852_1000
  libva              conda-forge/linux-64::libva-2.13.0-h7f98852_2
  libvorbis          conda-forge/linux-64::libvorbis-1.3.7-h9c3ff4c_0
  libvpx             conda-forge/linux-64::libvpx-1.11.0-h9c3ff4c_3
  libwebp-base       conda-forge/linux-64::libwebp-base-1.2.2-h7f98852_1
  libx11-common-cos~ conda-forge/noarch::libx11-common-cos6-x86_64-1.6.4-h9b0a68f_105
  libx11-cos6-x86_64 conda-forge/noarch::libx11-cos6-x86_64-1.6.4-h9b0a68f_105
  libxcb             conda-forge/linux-64::libxcb-1.13-h7f98852_1004
  libxkbcommon       conda-forge/linux-64::libxkbcommon-1.0.3-he3ba5ed_0
  libxml2            conda-forge/linux-64::libxml2-2.9.12-h885dcf4_1
  libzip             conda-forge/linux-64::libzip-1.8.0-h4de3113_1
  libzlib            conda-forge/linux-64::libzlib-1.2.11-h36c2ea0_1013
  loguru             conda-forge/linux-64::loguru-0.5.3-py310hff52083_3
  lz4-c              conda-forge/linux-64::lz4-c-1.9.3-h9c3ff4c_1
  mesa-dri-drivers-~ conda-forge/noarch::mesa-dri-drivers-cos6-x86_64-11.0.7-h9b0a68f_105
  mesa-dri1-drivers~ conda-forge/noarch::mesa-dri1-drivers-cos6-x86_64-7.11-h9b0a68f_105
  mesa-libgl-cos6-x~ conda-forge/noarch::mesa-libgl-cos6-x86_64-11.0.7-h9b0a68f_105
  mesa-libgl-devel-~ conda-forge/noarch::mesa-libgl-devel-cos6-x86_64-11.0.7-h9b0a68f_105
  mysql-common       conda-forge/linux-64::mysql-common-8.0.28-ha770c72_0
  mysql-libs         conda-forge/linux-64::mysql-libs-8.0.28-hfa10184_0
  ncurses            conda-forge/linux-64::ncurses-6.3-h9c3ff4c_0
  netgen             illinoisrocstar/linux-64::netgen-6.2.1910-no_python_h2bc3f7f_1
  nettle             conda-forge/linux-64::nettle-3.6-he412f7d_0
  nspr               conda-forge/linux-64::nspr-4.32-h9c3ff4c_1
  nss                conda-forge/linux-64::nss-3.74-hb5efdd6_0
  occt               conda-forge/linux-64::occt-7.4.0-h9121d39_3
  openh264           conda-forge/linux-64::openh264-2.1.1-h780b84a_0
  openssl            conda-forge/linux-64::openssl-1.1.1l-h7f98852_0
  pcre               conda-forge/linux-64::pcre-8.45-h9c3ff4c_0
  pip                conda-forge/noarch::pip-22.0.3-pyhd8ed1ab_0
  proj               conda-forge/linux-64::proj-8.2.0-h277dcde_0
  promesh            illinoisrocstar/linux-64::promesh-0.63.0-vtk91_h2bc3f7f_1
  pthread-stubs      conda-forge/linux-64::pthread-stubs-0.4-h36c2ea0_1001
  pugixml            conda-forge/linux-64::pugixml-1.11.4-h9c3ff4c_0
  python             conda-forge/linux-64::python-3.10.2-h85951f9_3_cpython
  python_abi         conda-forge/linux-64::python_abi-3.10-2_cp310
  qt                 conda-forge/linux-64::qt-5.12.9-ha98a1a1_5
  readline           conda-forge/linux-64::readline-8.1-h46c0cb4_0
  setuptools         conda-forge/linux-64::setuptools-60.8.1-py310hff52083_0
  sqlite             conda-forge/linux-64::sqlite-3.37.0-h9cd32fc_0
  svt-av1            conda-forge/linux-64::svt-av1-0.9.0-h9c3ff4c_0
  tbb                conda-forge/linux-64::tbb-2020.2-h4bd325d_4
  tbb-devel          conda-forge/linux-64::tbb-devel-2020.2-h4bd325d_4
  tk                 conda-forge/linux-64::tk-8.6.11-h27826a3_1
  tzdata             conda-forge/noarch::tzdata-2021e-he74cb21_0
  utfcpp             conda-forge/linux-64::utfcpp-3.2.1-ha770c72_0
  vtk                conda-forge/linux-64::vtk-9.1.0-no_osmesa_py310h2e30e98_102
  wheel              conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
  x264               conda-forge/linux-64::x264-1!161.3030-h7f98852_1
  x265               conda-forge/linux-64::x265-3.5-h4bd325d_1
  xorg-fixesproto    conda-forge/linux-64::xorg-fixesproto-5.0-h7f98852_1002
  xorg-kbproto       conda-forge/linux-64::xorg-kbproto-1.0.7-h7f98852_1002
  xorg-libice        conda-forge/linux-64::xorg-libice-1.0.10-h7f98852_0
  xorg-libsm         conda-forge/linux-64::xorg-libsm-1.2.3-hd9c2040_1000
  xorg-libx11        conda-forge/linux-64::xorg-libx11-1.7.2-h7f98852_0
  xorg-libxau        conda-forge/linux-64::xorg-libxau-1.0.9-h7f98852_0
  xorg-libxdmcp      conda-forge/linux-64::xorg-libxdmcp-1.1.3-h7f98852_0
  xorg-libxext       conda-forge/linux-64::xorg-libxext-1.3.4-h7f98852_1
  xorg-libxfixes     conda-forge/linux-64::xorg-libxfixes-5.0.3-h7f98852_1004
  xorg-libxt         conda-forge/linux-64::xorg-libxt-1.2.1-h7f98852_2
  xorg-xextproto     conda-forge/linux-64::xorg-xextproto-7.3.0-h7f98852_1002
  xorg-xproto        conda-forge/linux-64::xorg-xproto-7.0.31-h7f98852_1007
  xz                 conda-forge/linux-64::xz-5.2.5-h516909a_1
  zlib               conda-forge/linux-64::zlib-1.2.11-h36c2ea0_1013
  zstd               conda-forge/linux-64::zstd-1.5.2-ha95c52a_0



Downloading and Extracting Packages
_openmp_mutex-4.5    | 22 KB     | ######################################################################################################################################################################## | 100% 
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
#     $ conda activate promesh
#
# To deactivate an active environment, use
#
#     $ conda deactivate

(base) ______:~$ conda activate promesh

(promesh) _______:~$ nemosysRun testPromesh.json 
srvBase constructed
geoMeshBase constructed
srvBase destructed
geoMeshBase constructed
vtkGeoMesh constructed
vtkGeoMesh destructed
geoMeshBase destructed
geoMeshBase destructed

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