| Insert | Complete BUSCOs (C) | Complete and single-copy BUSCOs (S) | Complete and duplicated BUSCOs (D) | Fragmented BUSCOs (F) | Missing BUSCOs (M) | Total BUSCO group searched |
|---|---|---|---|---|---|---|
| 6 | 687 (90.7%) | 685 (90.4%) | 2 (0.3%) | 6 (0.8%) | 65 (8.5%) | 758 |
| 53 | 681 (89.8%) | 680 (89.7%) | 1 (0.1%) | 7 (0.9%) | 70 (9.3%) | 758 |
| 59 | 685 (90.3%) | 681 (89.8%) | 4 (0.5%) | 7 (0.9%) | 66 (8.8%) | 758 |
| 88 | 678 (89.4%) | 677 (89.3%) | 1 (0.1%) | 6 (0.8%) | 74 (9.8%) | 758 |
| insert | # of scaffolds | Total size of scaffolds | Longest scaffold | shortest scaffold | Number of scaffolds > 1M nt | Number of scaffolds > 100K nt | Number of scaffolds > 10K nt | N50 | L50 | N90 | L90 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 6 | 11 | 16022515 | 3579715 | 16004 | 8 | 10 | 11 | 1894960 | 3 | 1111997 | 7 |
| 53 | 10 | 15787988 | 4587006 | 4261 | 6 | 7 | 8 | 3523743 | 2 | 1113568 | 6 |
| 59 | 12 | 15994518 | 3515593 | 60343 | 7 | 9 | 12 | 1894562 | 3 | 1112789 | 7 |
| 88 | 23 | 15767318 | 3532437 | 2149 | 7 | 9 | 13 | 1755085 | 3 | 1109753 | 7 |
We did not observe rearrangement in the assembled strains: dotplots in eps format
| strain | insert | insert location 2019 ref genome | number of inserts | insert location on 2007 genome | chromosome |
|---|---|---|---|---|---|
| 6 (b13) | 1.BSA4upstream | PQNB01000001.1 778685 | 1 | NC_009042.1 1982553 | Chromosome 2 |
| 53 (b16) | 1.BSA4upstream | PQNB01000001.1 778195 | 1 | NC_009042.1 1963057 | Chromosome 2 |
| 55 (b18) | 1.BSA4upstream | PQNB01000001.1 778685 | 1 | NC_009042.1 1982553 | Chromosome 2 |
| 88 (b19 ) | 1.BSA4upstream | PQNB01000001.1 778195 | 1 | NC_009042.1 1963058 | Chromosome 2 |
| 6 (b13) | 2.GTDNUdownstream | PQNB01000023.1 107903 | 2 (different strands) | NC_009045.1 564770 | chromosome 5 |
| 53 (b16) | 2.GTDNUdownstream | PQNB01000019.1 593474 | 1 | NC_009068.1 1580399 | chromosome 1 |
| 55 (b18) | 2.GTDNUdownstream | PQNB01000022.1 615582 | 2 (different strands) | NC_009044.1 891874 | chromose 4 |
| 88 (b19) | 2.GTDNUdownstream | PQNB01000028.1 440888 | 2 (same strand) | NC_009068.1 3058614 | chromosome 1 |
