python: can't open file 'generateReadLenStats_wScraps_py2.py': [Errno 2] No such file or directory ERROR: Calculation of read length statistics failed!

[tuguangxian]

hello,when I run:SequelQC.sh -u subreads.txt -c scraps.txt
Running in WITH_SCRAPS mode
python: can't open file 'generateReadLenStats_wScraps_py2.py': [Errno 2] No such file or directory
ERROR: Calculation of read length statistics failed!
Do you know how to solve it?Thank you!

[aseetharam]

Hi, thanks for giving SequelQC a try! The script SequelQC.sh looks for the script generateReadLenStats_wScraps_py2.py within the folder where you run the main script. If it doesn't find it, it will complain that the script wasn't found. Simply copy the all the scripts from the Scripts directory and place it where you are running the SequeQC.sh script.
Hope this helps.