Provide more flexible versioning in the setup.py and requirements.txt to allow usage of anaconda pre-built packages during installation

Author: chapmanb

.gitignore

@@ -26,6 +26,7 @@ pip-log.txt
 .coverage
 .tox
 nosetests.xml
+.ropeproject
 
 # Translations
 *.mo

requirements.txt

@@ -1,12 +1,12 @@
 numpy>=1.7.1
-pyparsing==1.5.7
-pysam==0.7.4
-cyvcf==0.1.7
-PyYAML==3.10
-pybedtools==0.6.2
-python-graph-core==1.8.2
-python-graph-dot==1.8.2
-bottle==0.11.6
-ipython-cluster-helper==0.1.7
+pyparsing>=1.5.6,<=1.5.7
+pysam>=0.6
+cyvcf>=0.1.7
+PyYAML>=3.10
+pybedtools>=0.6.2
+python-graph-core>=1.8.2
+python-graph-dot>=1.8.2
+bottle>=0.11.6
+ipython-cluster-helper>=0.1.9
 bx-python>=0.7.1
 git+https://github.com/arq5x/gemini.git

setup.py

@@ -20,16 +20,16 @@
 setup(
         name="gemini",
         version=version,
-        install_requires=['numpy>=1.6.0', 
-                          'pyparsing>=1.5.6,<=1.5.7', 
-                          'pysam>=0.7.4',
-                          'cyvcf>=0.1.7', 
-                          'PyYAML >= 3.10', 
-                          'pybedtools>=0.6.1',
+        install_requires=['numpy>=1.6.0',
+                          'pyparsing>=1.5.6,<=1.5.7',
+                          'pysam>=0.6',
+                          'cyvcf>=0.1.7',
+                          'PyYAML >= 3.10',
+                          'pybedtools>=0.6.2',
                           'python-graph-core >= 1.8.2',
                           'python-graph-dot >= 1.8.2',
                           'bottle >= 0.11',
-                          'ipython-cluster-helper >= 0.1.7',
+                          'ipython-cluster-helper >= 0.1.9',
                           'bx-python >= 0.7.1'],
         dependency_links = ['http://github.com/arq5x/cyvcf/tarball/master#egg=cyvcf-0.1.5'],
         requires = ['python (>=2.5, <3.0)'],