_site.yml

name: "CytoMine"
navbar:
  title: "IMC CytoMine pipeline"
  type: inverse
  left:
    - text: "Home"
      icon: fa-home
      href: index.html
    - text: "Introduction"
      href: introduction.html
      icon: fa-cog
      menu:
        - text: "Preporcessing"
          href:  preprocessing.html
        - text: "Visulaization"
          href: visualization.html
        - text: "Cell Clustering /Cell subset Detection"
          href: clustering.html
        - text: "Discovery"
          href: discovery.html
    - text: "Tutorial"
      href: Tutorial.html
      icon: fa-book
    - text: "Helpful Links"
      href: Helpful_links.html
      icon: fa-ambulance
          
  right:
    - icon: fa-github fa-lg
      href: https://github.com/WCMCBioinformatics/CyTOF
    - icon: fa-info
      href: about.html
      
output_dir: "."      
output:
  html_document:
    theme: flatly
    highlight: textmate
    include:
    css: style.css