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HumanDonor.md

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igvfclient::HumanDonor

A human donor of any biosample, including cell lines. Submission of any sample originating from a human donor requires submission of information about the relevant donor. For example, submission of the donor of K562 is a prerequisite for submission of any K562 cell line samples.

Properties

Name Type Description Notes
release_timestamp character The date the object was released. [optional]
taxa character The species of the organism. [optional] [Enum: [Homo sapiens]]
publications set[character] The publications associated with this object. [optional]
url character An external resource with additional information. [optional]
documents set[character] Documents that provide additional information (not data file). [optional]
lab character Lab associated with the submission. [optional]
award character Grant associated with the submission. [optional]
accession character A unique identifier to be used to reference the object prefixed with IGVF. [optional]
alternate_accessions set[character] Accessions previously assigned to objects that have been merged with this object. [optional]
collections set[character] Some samples are part of particular data collections. [optional] [Enum: ]
status character The status of the metadata object. [optional] [Enum: [in progress, preview, released, deleted, replaced, revoked, archived]]
revoke_detail character Explanation of why an object was transitioned to the revoked status. [optional] [Pattern: ^(\S+(\s
schema_version character The version of the JSON schema that the server uses to validate the object. [optional] [Pattern: ^\d+(\.\d+)*$]
uuid character The unique identifier associated with every object. [optional]
notes character DACC internal notes. [optional] [Pattern: ^(\S+(\s
aliases set[character] Lab specific identifiers to reference an object. [optional]
creation_timestamp character The date the object was created. [optional]
submitted_by character The user who submitted the object. [optional]
submitter_comment character Additional information specified by the submitter to be displayed as a comment on the portal. [optional] [Pattern: ^(\S+(\s
description character A plain text description of the object. [optional] [Pattern: ^(\S+(\s
dbxrefs set[character] Identifiers from external resources that may have 1-to-1 or 1-to-many relationships with IGVF donors. [optional]
sex character Sex of the donor. [optional] [Enum: [male, female, unspecified]]
phenotypic_features set[character] A list of associated phenotypic features of the donor. [optional]
virtual character Virtual donors are not representing actual human or model organism donors, samples coming from which were used in experiments, but rather capturing metadata about hypothetical donors that the reported analysis results are relevant for. [optional]
related_donors set[RelatedDonor] Familial relations of this donor. [optional]
ethnicities set[character] Ethnicity of the donor. [optional] [Enum: ]
human_donor_identifiers set[character] Identifiers of this human donor. [optional]
@id character [optional]
@type array[character] [optional]
summary character A summary of the human donor. [optional]