A gene in the human or mouse genomes. The genes objects in IGVF are imported from GENCODE.
| Name | Type | Description | Notes |
|---|---|---|---|
| release_timestamp | character | The date the object was released. | [optional] |
| transcriptome_annotation | character | The annotation and version of the reference resource. | [optional] [Enum: [GENCODE 32, GENCODE 40, GENCODE 41, GENCODE 42, GENCODE 43, GENCODE 44, GENCODE 45, GENCODE 47, GENCODE Cast - M32, GENCODE M30, GENCODE M31, GENCODE M32, GENCODE M33, GENCODE M34, GENCODE M36]] |
| taxa | character | The species of the organism. | [optional] [Enum: [Homo sapiens, Mus musculus]] |
| status | character | The status of the metadata object. | [optional] [Enum: [archived, deleted, in progress, preview, released]] |
| schema_version | character | The version of the JSON schema that the server uses to validate the object. | [optional] [Pattern: ^\d+(\.\d+)*$] |
| uuid | character | The unique identifier associated with every object. | [optional] |
| notes | character | DACC internal notes. | [optional] [Pattern: ^(\S+(\s |
| aliases | set[character] | Lab specific identifiers to reference an object. | [optional] |
| creation_timestamp | character | The date the object was created. | [optional] |
| submitted_by | character | The user who submitted the object. | [optional] |
| submitter_comment | character | Additional information specified by the submitter to be displayed as a comment on the portal. | [optional] [Pattern: ^(\S+(\s |
| description | character | A plain text description of the object. | [optional] [Pattern: ^(\S+(\s |
| geneid | character | ENSEMBL GeneID of official nomenclature approved gene. The GeneID does not include the current version number suffix. | [optional] [Pattern: ^ENS[A-Z]*G\d{11}(_PAR_Y)?$] |
| symbol | character | Gene symbol approved by the official nomenclature. | [optional] |
| name | character | The full gene name preferably approved by the official nomenclature. | [optional] |
| synonyms | set[character] | Alternative symbols that have been used to refer to the gene. | [optional] |
| dbxrefs | set[character] | Unique identifiers from external resources. | [optional] |
| locations | set[GeneLocation1] | Gene locations specified using 1-based, closed coordinates for different versions of reference genome assemblies. | [optional] |
| version_number | character | Current ENSEMBL GeneID version number of the gene. | [optional] [Pattern: ^\d+?] |
| @id | character | [optional] | |
| @type | array[character] | [optional] | |
| summary | character | [optional] | |
| title | character | [optional] | |
| geneid_with_version | character | The ENSEMBL GeneID concatenated with its version number. | [optional] |