From 07c272c875a80b1fe4405bda15ea7c4dc208f3e1 Mon Sep 17 00:00:00 2001 From: IvanHCenalmor Date: Thu, 3 Aug 2023 13:43:47 +0100 Subject: [PATCH] Requirements for both StarDist notebooks --- .../StarDist_2D_requirements_simple.txt | 94 +++++-------------- .../StarDist_3D_requirements_simple.txt | 65 ++++--------- 2 files changed, 45 insertions(+), 114 deletions(-) diff --git a/requirements_files/StarDist_2D_requirements_simple.txt b/requirements_files/StarDist_2D_requirements_simple.txt index 8b27fe80..ffe11dea 100644 --- a/requirements_files/StarDist_2D_requirements_simple.txt +++ b/requirements_files/StarDist_2D_requirements_simple.txt @@ -1,71 +1,27 @@ -appdirs==1.4.4 -asciitree==0.3.3 -astropy==4.3.1 -astunparse==1.6.3 -atomicwrites==1.4.1 -certifi==2022.6.15 -cftime==1.6.1 -chardet==3.0.4 -click==7.1.2 -cloudpickle==1.1.1 -configparser==5.2.0 -csbdeep==0.7.2 -Cython==0.29.32 -dask==2.12.0 -distributed==1.25.3 -entrypoints==0.4 -fasteners==0.17.3 -fastrlock==0.8 -fpdf==1.7.2 -gast==0.3.3 +# Requirements for StarDist_2D_ZeroCostDL4Mic.ipynb +PTable==0.9.2 +Pillow==9.4.0 +astropy==5.2.2 +csbdeep==0.7.4 +fpdf2==2.7.4 +future==0.18.3 google==2.0.3 -h5py==2.10.0 -httplib2==0.17.4 -idna==2.10 -imagecodecs==2021.11.20 -imageio==2.9.0 -joblib==1.1.0 -keras==2.9.0 -llvmlite==0.39.0 -marshmallow==3.17.0 -msgpack==1.0.4 -netCDF4==1.6.0 -numba==0.56.0 -numcodecs==0.10.2 -numexpr==2.8.3 -numpy==1.21.6 -oauth2client==4.1.3 -packaging==21.3 -pandas==1.3.5 -pluggy==0.7.1 -pooch==1.6.0 -py==1.11.0 -pyarrow==6.0.1 -pyasn1==0.4.8 -pydot==1.3.0 -pytest==3.6.4 -pytz==2022.1 -requests==2.23.0 -rsa==4.9 -scikit-image==0.18.3 -scikit-learn==1.0.2 -scipy==1.4.1 -six==1.15.0 -sortedcontainers==2.4.0 -stardist==0.8.3 -tblib==1.7.0 -tensorboard==2.2.2 -tensorflow==2.2.0 -termcolor==1.1.0 -threadpoolctl==3.1.0 -tifffile==2021.11.2 -toolz==0.12.0 -tornado==5.1.1 -tqdm==4.64.0 -uritemplate==3.0.1 -urllib3==1.24.3 +gputools==0.2.14 +imagecodecs==2023.7.10 +ipywidgets==8.0.7 +matplotlib==3.7.1 +numpy==1.22.4 +pandas==1.5.3 +pathlib==1.0.1 +pip==23.1.2 +requests==2.27.1 +scikit-image==0.19.3 +scikit-learn==1.2.2 +scipy==1.10.1 +stardist==0.8.5 +tabulate==0.9.0 +tensorflow==2.12.0 +tifffile==2023.7.18 +tqdm==4.65.0 wget==3.2 -wrapt==1.14.1 -xarray==0.20.2 -zarr==2.12.0 -zipp==3.8.1 +zarr==2.16.0 diff --git a/requirements_files/StarDist_3D_requirements_simple.txt b/requirements_files/StarDist_3D_requirements_simple.txt index cd28d63e..5fc87737 100644 --- a/requirements_files/StarDist_3D_requirements_simple.txt +++ b/requirements_files/StarDist_3D_requirements_simple.txt @@ -1,47 +1,22 @@ -astropy==4.2 -astunparse==1.6.3 -certifi==2020.12.5 -chardet==3.0.4 -cloudpickle==1.3.0 -configparser==5.0.2 -csbdeep==0.6.1 -dask==2.12.0 -dill==0.3.3 -flatbuffers==1.12 -fpdf==1.7.2 -gast==0.3.3 +# Requirements for StarDist_3D_ZeroCostDL4Mic.ipynb +Pillow==9.4.0 +astropy==5.2.2 +csbdeep==0.7.4 +fpdf2==2.7.4 +future==0.18.3 google==2.0.3 -h5py==2.10.0 -httplib2==0.17.4 -idna==2.10 -image==1.5.33 -imageio==2.4.1 -joblib==1.0.1 -llvmlite==0.34.0 -multiprocess==0.70.11.1 -numba==0.51.2 -numpy==1.19.5 -oauth2client==4.1.3 -portpicker==1.3.1 -psutil==5.4.8 -py==1.10.0 -pyasn1==0.4.8 -pydot==1.3.0 -requests==2.23.0 -rsa==4.7.2 -scipy==1.4.1 -six==1.15.0 -sklearn==0.0 -sortedcontainers==2.3.0 -stardist==0.6.2 -tblib==1.7.0 -tensorboard==2.4.1 -tensorflow==2.4.1 -termcolor==1.1.0 -tifffile==2021.2.26 -toolz==0.11.1 -tqdm==4.41.1 -uritemplate==3.0.1 -urllib3==1.24.3 +gputools==0.2.14 +ipywidgets==8.1.0 +matplotlib==3.7.1 +numpy==1.22.4 +pandas==1.5.3 +pathlib==1.0.1 +pip==23.1.2 +scikit-image==0.19.3 +scikit-learn==1.2.2 +scipy==1.10.1 +stardist==0.8.5 +tensorflow==2.12.0 +tifffile==2023.7.18 +tqdm==4.65.0 wget==3.2 -wrapt==1.12.1