NumPY error when installed thru singularity and conda

[ccbruels]

Hi,

I've run ClairS and ClairS-TO previously (they are great!), and installed the current versions of both last week. Now I get the same NumPY error when I try to run the previous version, the current version, and when I install using conda or singularity.

Thanks in advance for any insight you can provide!

The main issue seems to be:

=====
A module that was compiled using NumPy 1.x cannot be run in
NumPy 2.0.2 as it may crash. To support both 1.x and 2.x
versions of NumPy, modules must be compiled with NumPy 2.0.
Some module may need to rebuild instead e.g. with 'pybind11>=2.12'.

If you are a user of the module, the easiest solution will be to
downgrade to 'numpy<2' or try to upgrade the affected module.
We expect that some modules will need time to support NumPy 2.

[ccbruels]

Update: I was able to downgrade NumPY to v1.22.4 which seems to have resolved the issue as variants are now being called.

Apparently NumPY was recently updated. Could you please post info about what version of NumPY to use when installing ClairS and presumably ClairS-TO and Clair3?

Thanks!