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Thanks for reporting. Could you try to re-pull our latest docker image using singularity (singularity pull docker://hkubal/clairs:latest)? Pls let us know if the issue persists.
@erdikilic When did you pull clairs.sif with the error? We have a minor update to fix the CNV reference file path issue two weeks ago when upgrading ClairS from v0.2.0 to v0.3.0. Not sure if you using an outdated docker image, as we cannot repeat your issue with the latest docker image.
I cleared the cache and repulled the image to ensure I have the latest version, which is v0.3.0. I've started it and am now waiting to see if any errors occur. Thanks for your response, @zhengzhenxian.
I got this error when I run the following commands;
It is still running and din't stop the variant calling. Also, when I check the folder, the loci files exist.
7_CGT.log
run.log
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