_config.yml

# Welcome to Jekyll!
#
# This config file is meant for settings that affect your whole blog, values
# which you are expected to set up once and rarely need to edit after that.
# For technical reasons, this file is *NOT* reloaded automatically when you use
# 'jekyll serve'. If you change this file, please restart the server process.

# Site settings
title: Sequence Variant Nomenclature
email: hgvs-nomenclature@googlegroups.com
description: >  # this means to ignore newlines until "baseurl:"
    This site covers <b>HGVS Nomenclature</b>, the recommendations for the description of sequence variants in DNA, RNA and protein sequences. It is used to report and exchange information of such variants  and serves as an international standard. When using the recommendations please cite: <i>Den Dunnen et al. 2016, Hum.Mutat. 37:564-569<a href='http://onlinelibrary.wiley.com/doi/10.1002/humu.22981/abstract' target='_blank'></a></i>. HGVS-nomenclature is authorised by the Human Genome Organization (HUGO), under the responsibility of the HGVS Variant Nomenclature Committee (HVNC). Please <a href='https://www.paypal.com/donate/?hosted_button_id=DHJVLF3Z2TA2U' target='\_blank'>support our efforts: <img height='20px' float='left' src='/assets/donate.gif'></img></a> <img height='50px' float='left' src='/assets/GVdonationQRcode.png'></img>
baseurl: ""  # the subpath of your site, e.g. /blog
url: "http://varnomen.hgvs.org/"  # the base hostname & protocol for your site
version: 20.05  # Current nomenclature version number
collections:
    recommendations:
        output: true
        permalink: /recommendations/:path/
    bg-material:
        output: true
        permalink: /bg-material/:path/
variant-priority:   # used when generating order of variants in site structure and display
# Case-sensitive - use lowercase
    - substitution
    - deletion
    - duplication
    - insertion
    - inversion
    - deletion-insertion
    - alleles
    - repeated sequences
    - complex (HGVS/ISCN)
    - other
    # RNA specific
    - splicing
    # protein specific
    - frame shift
    - extension

# Build settings
markdown: kramdown  # DOCS: http://kramdown.gettalong.org/syntax.html

# tested, but disabled for now
plugins:
  - jekyll-redirect-from