pyproject.toml

[build-system]
requires = ["setuptools>=30.3.0", "wheel", "setuptools_scm[toml]>=6.2,!=8.0"]
build-backend = "setuptools.build_meta"

[tool.setuptools_scm]
write_to = "hera_cal/_version.py"
parentdir_prefix_version = "hera_cal-"
fallback_version  = "0.0.0"

[project]
name = "hera-calibration"
description = "A collection of calibration routines to run on the HERA instrument."
readme = "README.md"
authors = [
  {name="HERA Team"},
]
license = {text="BSD"}
classifiers = [
  "Development Status :: 4 - Beta",
  "Intended Audience :: Science/Research",
  "License :: OSI Approved",
  "License :: OSI Approved :: MIT License",
  "Natural Language :: English",
  "Programming Language :: Python :: 3",
  "Programming Language :: Python :: 3 :: Only",
  "Topic :: Scientific/Engineering :: Astronomy",
  "Topic :: Scientific/Engineering :: Physics",
]
dynamic=["version"]
requires-python = ">=3.9"
dependencies = [
    'numpy>=1.10',
    "scipy>=1.9.0",
    "h5py",
    "hdf5plugin",
    "astropy",
    "astropy-healpix",
    "pyuvdata>=3.1.3",
    "linsolve",
    "hera_qm>=2.2.0",
    "scikit-learn",
    "hera-filters",
    "line_profiler",
    "aipy",
    "rich",
    "jax",
    "jaxlib",
    "optax",
    "attrs",
    "frozendict",
    "toml",
]

[project.optional-dependencies]
dev = [
    "pytest",
    "pre-commit",
    "pytest-cov",
    "hera_sim>=4.3.0",
    "pytest-xdist",
    "hypothesis",
    "ruff",
]

[tool.setuptools]
script-files = [
    "scripts/apply_cal.py",
    "scripts/auto_reflection_run.py",
    "scripts/baseline_chunker.py",
    "scripts/chunk_files.py",
    "scripts/delay_filter_run.py",
    "scripts/extract_autos.py",
    "scripts/extract_hh.py",
    "scripts/flag_all.py",
    "scripts/lstbin_run.py",
    "scripts/lstbin_simple.py",
    "scripts/model_calibration_run.py",
    "scripts/multiply_gains.py",
    "scripts/noise_from_autos.py",
    "scripts/post_redcal_abscal_run.py",
    "scripts/query_ex_ants.py",
    "scripts/red_average.py",
    "scripts/redcal_run.py",
    "scripts/select_spw_ranges.py",
    "scripts/smooth_cal_run.py",
    "scripts/subselect.py",
    "scripts/throw_away_flagged_antennas.py",
    "scripts/time_average.py",
    "scripts/time_chunk_from_baseline_chunks_run.py",
    "scripts/tophat_frfilter_run.py",
    "scripts/transfer_flags.py"
]

[tool.pytest]
addopts = "--ignore=scripts --cov=hera_cal --cov-config=.coveragerc"

[tool.pytest.ini_options]
filterwarnings = [
    "ignore:Fixing auto-correlations to be be real-only:UserWarning",
    'ignore:telescope_location is not set\. Using known values for HERA\.:UserWarning',
    "ignore:invalid value encountered in divide:RuntimeWarning",
]

[tool.ruff]
line-length = 88
target-version = "py39"

[tool.ruff.lint]
select = [
    "E",
    "W",
    "A",    # builtins
    # "ARG",  # unused arguments
    # "B",    # bugbear
    # "C4",   # comprehensions
    # "C90",  # mccabe complexity
    # "COM",  # commas
    # "D",    # docstyle
    # "DTZ",  # datetime
    # "F",    # pyflakes
    # "FA",   # future annotations
    # "FURB", # refurb
    # "I",    # isort
    # "ISC",  # implicit string concat
    # "LOG",  # logging
    # "N",    # pep8-naming
    # "NPY",  # numpy-specific rules
    # "PERF", # performance
    # "UP",   # pyupgrade
    # "PIE",  # flake8-pie
    # "PLC",  # pylint
    # "PLE",  # pylint
    # "PLR",  # pylint
    # "PLW",  # pylint
    # "PT",   # pytest-style
    # "PTH",  # use pathlib
    # "Q",    # quotes
    # "RSE",  # flake8-raise
    # "RUF",  # ruff-specific rules
    # "SIM",  # flake8-simplify
    # "TRY",  # tryceratops
    # "UP",   # pyupgrade
]

exclude = [
    "scripts/notebooks/*.ipynb",  # For now, ignore notebooks when linting.
]

ignore = [
    "E402",
    "E501",
    "W291",
    "W293",
    "A005",   # module io shadows python stdlib
    # Following Rulesets we really don't want
    "AIR",    # airflow - unused library
    "ASYNC",  # async  -- unused library
    "DJ",     # django -- unused library
    "EXE",    # executable -- unused features
    "G",      # logging-format -- this linter gives bad advice a lot
    "INT",    # gettext -- unknown why we would use this
    "PD",     # unused library
    "PGH",    # pygrep hooks?
    "PYI",    # typing stuff
    "S",      # flake8-bandit -- security stuff that isn't really applicable
    "SLOT",   # slots stuff that isn't applicable atm
    "TCH",    # type-checking
    "TD",     # todo's
    "TID",    # tidy imports (should be done with isort)
    "TRIO",   # trio unused package
    "YTT",    # py2to3 stuff
]