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protein_comparison/ProteinComparison.lp

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protein_comparison/README.md

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# Protein Comparison
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This model is an example of a Protein Comparison problem formulated as a quadratic assignment problem using the Gurobi
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Python API and solved with the Gurobi Optimizer.
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This model is example 29 from the fifth edition of Model Building in Mathematical Programming by H. Paul Williams
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on pages 290-291 and 345.
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This modeling example is at the advanced level, where we assume that you know Python and the Gurobi Python API
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and that you have advanced knowledge of building mathematical optimization models. Typically, the objective function and/or constraints of these examples are complex or require advanced features of the Gurobi Python API.
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https://gurobi.github.io/modeling-examples/protein_comparison/protein_comparison.html
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## Download the Repository
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You can download the repository containing this and other examples
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by clicking [here](https://github.com/Gurobi/modeling-examples/archive/master.zip).
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## Gurobi License
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In order to run this Jupyter Notebook properly, you must have a Gurobi license. If you do not have one, you can request
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an [evaluation license](https://www.gurobi.com/downloads/request-an-evaluation-license/?utm_source=3PW&utm_medium=OT&utm_campaign=WW-MU-MUI-OR-O_LEA-PR_NO-Q3_FY20_WW_JPME_PROTEIN_COMPARISON_COM_EVAL_GitHub&utm_term=Protein_Comparison&utm_content=C_JPM)
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as a *commercial user*, or download a [free license](https://www.gurobi.com/academia/academic-program-and-licenses/?utm_source=3PW&utm_medium=OT&utm_campaign=WW-MU-EDU-OR-O_LEA-PR_NO-Q3_FY20_WW_JPME_PROTEIN_COMPARISON_ACADEMIC_EVAL_GitHub&utm_term=Protein_Comparison&utm_content=C_JPM) as an *academic user*.
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Copyright © 2020 Gurobi Optimization, LLC

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