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question on background peak selection #96

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q226 opened this issue Mar 6, 2022 · 0 comments
Open

question on background peak selection #96

q226 opened this issue Mar 6, 2022 · 0 comments

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@q226
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q226 commented Mar 6, 2022

Thanks for creating chromVAR, I have a question about whether the average accessibility or summed accessibility across cells were used in background peak selection?
Maybe I missed something and please correct me if I am wrong, in the paper it mentioned the average accessibility whereas in the line 127 at script https://github.com/GreenleafLab/chromVAR/blob/master/R/background_peaks.R the summed fragment per peaks was used.
Looking forward to hearing from you!
Thanks!

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