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> ggmotif_plot(toPWM(reverseComplement(motifs[[closest_match1]]),type = "prob")) Error in normargPfm(x) : invalid PFM 'x': not an integer matrix #115

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GaF123 opened this issue Sep 3, 2024 · 1 comment
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> ggmotif_plot(toPWM(reverseComplement(motifs[[closest_match1]]),type = "prob")) Error in normargPfm(x) : invalid PFM 'x': not an integer matrix #115

GaF123 opened this issue Sep 3, 2024 · 1 comment

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@GaF123
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GaF123 commented Sep 3, 2024

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@GaF123 GaF123 changed the title # Closest matching known ggmotif_plot(toPWM(reverseComplement(motifs[[closest_match1]]),type = "prob")) > ggmotif_plot(toPWM(reverseComplement(motifs[[closest_match1]]),type = "prob")) Error in normargPfm(x) : invalid PFM 'x': not an integer matrix Sep 3, 2024
@GaF123
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GaF123 commented Sep 3, 2024

when I have done De novo kmer assembly, I run this code: # Closest matching known
ggmotif_plot(toPWM(reverseComplement(motifs[[closest_match1]]),type = "prob")).
Then I got this error: Error in normargPfm(x) : invalid PFM 'x': not an integer matrix

Please help

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