ArchR used for single sample .tsv file

[IqRaZaFaR16]

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[immanuelazn]

Hi @IqRaZaFaR16! Thanks for using ArchR! Please make sure that your post belongs in the Issues section. Only bugs and error reports belong in the Issues section. Usage questions and feature requests should be posted in the Discussions section, not in Issues.

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[IqRaZaFaR16]

Hi,

Currently, I'm using the ArchR package for analyzing an scATAC-seq sample, and I have only one .tsv file. I would like to identify transcription factors from my input data. However, when trying to use Harmony for cluster identification, it returns an error. I understand that the Harmony package is typically used to remove batch effects.

Do you have any suggestions on how I can analyze my single .tsv file using ArchR and identify potential transcription factors from the data?

I look forward to your response.

Thank you!