addReproduciblePeakSet error: summits.bed' does not exist or is non-readable #2278
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huyulan-funan
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The LOG is "sh: line 1: 10840 Segmentation fault 'macs2' callpeak -g 2.78e+09 --name B_cell..D4-1 --treatment /public42/TEST/XiongXiaoHui/Singcell_analysis/SingleCell_ATAC_lims/Yuanjinghan_LC-X20240602006_New/04.DVSDK/PeakCalls/InsertionBeds/B_cell..D4-1.insertions.bed --outdir /public42/TEST/XiongXiaoHui/Singcell_analysis/SingleCell_ATAC_lims/Yuanjinghan_LC-X20240602006_New/04.DVSDK/PeakCalls/InsertionBeds --format BED --call-summits --keep-dup all --nomodel --nolambda --shift -75 --extsize 150 -q 0.1 > /dev/null 2> /dev/null
Error in data.table::fread(summitsFile, select = c(1, 2, 3, 5)) :
File '/public42/TEST/XiongXiaoHui/Singcell_analysis/SingleCell_ATAC_lims/Yuanjinghan_LC-X20240602006_New/04.DVSDK/Pea
kCalls/InsertionBeds/B_cell._.D4-1_summits.bed' does not exist or is non-readable. getwd()=='/public42/TEST/XiongXiaoHui/Singcell_analysis/SingleCell_ATAC_lims/Yuanjinghan_LC-X20240602006_New/04.DVSDK'"
I encountered this error, and it is sporadic. I tried to update the version of numpy (the latest version and v2.2.6) but it did not solve my problem. Please help me, thanks!
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