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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["hatchling >= 1.13.0"]
build-backend = "hatchling.build"
[project]
name = "genet"
description = "GenET: Genome Editing Toolkit"
readme = "README.md"
requires-python = ">=3.9"
license = "MIT"
authors = [
{ name = "Goosang Yu", email = "[email protected]" },
]
keywords = [
"genome-editing",
"CRISPR",
"genetics",
"analysis",
"ai",
"deep-learning",
"bioinformatics",
"python",
]
classifiers = [
"License :: OSI Approved :: MIT License",
"Operating System :: Unix",
"Operating System :: POSIX",
"Operating System :: MacOS :: MacOS X",
"Intended Audience :: Science/Research",
"Intended Audience :: Developers",
"Topic :: Software Development :: Libraries :: Application Frameworks",
"Topic :: Software Development :: Libraries :: Python Modules",
"Topic :: Software Development :: Libraries",
"Topic :: Software Development",
"Programming Language :: Python",
"Programming Language :: Python :: 3 :: Only",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
]
dependencies = [
'numpy <= 1.26.4',
'pandas',
'regex',
'biopython',
'torch',
'tensorflow < 2.10.0 ; platform_system != "Darwin"',
'tensorflow-macos < 2.10.0 ; platform_system == "Darwin"',
'protobuf <= 3.20.3',
'silence_tensorflow',
'pyarrow',
'fastparquet',
'tqdm',
'editdistance',
'viennarna',
]
dynamic = ["version"]
[project.urls]
Homepage = "https://github.com/Goosang-Yu/genet"
Repository = "https://github.com/Goosang-Yu/genet"
Source = "https://github.com/Goosang-Yu/genet"
Tracker = "https://github.com/Goosang-Yu/genet/issues"
[tool.hatch.version]
path = "genet/__init__.py"
[tool.setuptools.package-data]
myModule = [
'genet/predict/models/DeepSpCas9/DeepSpCas9_model.data-00000-of-00001',
'genet/predict/models/DeepSpCas9/DeepSpCas9_model.index',
'genet/predict/models/DeepSpCas9/DeepSpCas9_model.meta',
]
[tool.hatch.build.targets.sdist]
exclude = [
"/.github",
"/docs",
"/dev_ing",
"/tests",
"/database/metadata",
"/genet/models/*/",
"/genet/database/metadata/",
"/test_datasets/",
]
[tool.hatch.build.targets.wheel]
packages = ["genet"]