diff --git a/LICENSE b/LICENSE new file mode 100644 index 0000000..8c29ca9 Binary files /dev/null and b/LICENSE differ diff --git a/README.Rmd b/README.Rmd index ee7b0a9..eee2c55 100644 --- a/README.Rmd +++ b/README.Rmd @@ -15,7 +15,7 @@ knitr::opts_chunk$set( [![R-CMD-check](https://github.com/GfellerLab/SuperCell/workflows/R-CMD-check/badge.svg)](https://github.com/GfellerLab/SuperCell/actions) [![DOI](https://img.shields.io/badge/DOI%3A-10.1186/s12859--022--04861--1-brightgreen)](https://doi.org/10.1186/s12859-022-04861-1) -[![License](https://img.shields.io/badge/License-LICENSE-green)](./License_SuperCell_CC_BY-NC-ND_4.0.pdf) +[![License](https://img.shields.io/badge/License-LICENSE-green)](./LICENSE) # Coarse-graining of large single-cell RNA-seq data into metacells @@ -80,17 +80,17 @@ library(SuperCell) 3. [Building metacells with SuperCell and alayzing them with a standard Seurat pipeline](https://github.com/GfellerLab/SIB_workshop/blob/main/workbooks/Workbook_1__cancer_cell_lines.md) 4. [Data integration of metacells built with SuperCell](https://github.com/GfellerLab/SIB_workshop/blob/main/workbooks/Workbook_2__COVID19_integration.md) -## [License](./License_SuperCell_CC_BY-NC-ND_4.0.pdf) +## [License](./LICENSE) SuperCell is developed by the group of David Gfeller at University of Lausanne. -SuperCell can be used freely by academic groups for non-commercial purposes under the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0) (see [license](./License_SuperCell_CC_BY-NC-ND_4.0.pdf)). +SuperCell can be used freely by academic groups for non-commercial purposes under the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0) (see [license](./LICENSE)). The product is provided free of charge, and, therefore, on an "as is" basis, without warranty of any kind. FOR-PROFIT USERS If you plan to use SuperCell or any data provided with the script in any for-profit application, you are required to obtain a separate license. -To do so, please contact [eauffarth\@licr.org](mailto:eauffarth@licr.org) at the Ludwig Institute for Cancer Research Ltd. +To do so, please contact Nadette Bulgin [nbulgin\@licr.org](mailto:nbulgin@licr.org) at the Ludwig Institute for Cancer Research Ltd. If required, FOR-PROFIT USERS are also expected to have proper licenses for the tools used in SuperCell, including the R packages igraph, RANN, WeightedCluster, corpora, weights, Hmisc, Matrix, ply, irlba, grDevices, patchwork, ggplot2 and velocyto.R diff --git a/README.md b/README.md index 6f5c3fb..759f921 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ [![R-CMD-check](https://github.com/GfellerLab/SuperCell/workflows/R-CMD-check/badge.svg)](https://github.com/GfellerLab/SuperCell/actions) -[![DOI](https://img.shields.io/badge/DOI%3A-10.1186/s12859--022--04861--1-brightgreen)](https://doi.org/10.1186/s12859-022-04861-1) -[![License](https://img.shields.io/badge/License-LICENSE-green)](./License_SuperCell_CC_BY-NC-ND_4.0.pdf) +[1E![DOI](https://img.shields.io/badge/DOI%3A-0.1186/s12859--022--04861--1-brightgreen)](https://doi.org/10.1186/s12859-022-04861-1) +[![License](https://img.shields.io/badge/License-LICENSE-green)](./LICENSE) # Coarse-graining of large single-cell RNA-seq data into metacells @@ -106,13 +106,13 @@ library(SuperCell) 4. [Data integration of metacells built with SuperCell](https://github.com/GfellerLab/SIB_workshop/blob/main/workbooks/Workbook_2__COVID19_integration.md) -## [License](./License_SuperCell_CC_BY-NC-ND_4.0.pdf) +## [License](./LICENSE) SuperCell is developed by the group of David Gfeller at University of Lausanne. SuperCell can be used freely by academic groups for non-commercial -purposes under the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0) (see [license](./License_SuperCell_CC_BY-NC-ND_4.0.pdf)). The product is provided free of +purposes under the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0) (see [license](./LICENSE)). The product is provided free of charge, and, therefore, on an “as is” basis, without warranty of any kind. @@ -120,7 +120,7 @@ FOR-PROFIT USERS If you plan to use SuperCell or any data provided with the script in any for-profit application, you are required to obtain a separate license. -To do so, please contact at the Ludwig Institute +To do so, please contact Nadette Bulgin at the Ludwig Institute for Cancer Research Ltd. If required, FOR-PROFIT USERS are also expected to have proper licenses