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toydata.r
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toydata.r
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# Toy data to test wranglR. To use it, just run this file and pass wranglR the variables XT and Groups
# For instance, write(wranglR(NULL,XT,Groups,A=F,shift=1,hardCut=T)$tree,"test.tre");
TestOTUs = matrix(c(
1,1,1,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,1,1,1,1,1,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,1,1,1,1,1,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,1,1,
1,0,1,0,1,0,1,0,1,0,1,0,1,0,1,0,1,0,1,0,
0,1,0,1,0,1,0,1,0,1,0,1,0,1,0,1,0,1,0,1,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,
1,1,1,1,1,0,0,0,0,0,1,1,1,1,1,0,0,0,0,0,
0,0,0,0,0,1,1,1,1,1,0,0,0,0,0,1,1,1,1,1,
1,0,1,0,1,0,0,1,0,0,1,0,1,0,1,0,0,1,0,0
),11,byrow=T);
TestOTUz = matrix(c(
1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1
),20,byrow=T);
TestOTUs2 = matrix(c(
1,1,1,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,1,1,1,1,1,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,1,1,1,1,1,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,1,1,
1,0,1,0,1,0,1,0,1,0,1,0,1,0,1,0,1,0,1,0,
0,1,0,1,0,1,0,1,0,1,0,1,0,1,0,1,0,1,0,1,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,
1,1,1,1,1,0,0,0,0,0,1,1,1,1,1,0,0,0,0,0,
0,0,0,0,0,1,1,1,1,1,0,0,0,0,0,1,1,1,1,1,
1,0,1,0,1,0,0,1,0,0,1,0,1,0,1,0,0,1,0,0
),11,byrow=T);
zeroState = c(0,0,0,0,0,0,0,0,0,0,1)
#oneState = 1-zeroState;
#allState1 = matrix(rep(oneState,11),11,byrow=T);
allState0 = matrix(rep(zeroState,11),11,byrow=T);
XT = cbind(TestOTUs,allState0)
#XT = cbind(TestOTUs,TestOTUz[1:11,1:11])
Groups = c(rep("CD",20),rep("UC",11));
rownames(XT)=c("1","2","3","4","5","6","7","8","9","10","11")