From 153b8277e1c15efbb99dcaffb35a1e7c0eb6114b Mon Sep 17 00:00:00 2001 From: eby Date: Wed, 23 Sep 2020 13:36:47 +0900 Subject: [PATCH] Updated for MSigDB 7.2 --- docs/v10/index.html | 5 +++++ docs/v10/test.md | 5 +++++ manifest | 4 ++-- release.properties | 6 +++--- 4 files changed, 15 insertions(+), 5 deletions(-) diff --git a/docs/v10/index.html b/docs/v10/index.html index 56e451a..4dcab11 100644 --- a/docs/v10/index.html +++ b/docs/v10/index.html @@ -220,6 +220,11 @@

Version Comments

+ + 10.0.4 + 2020-9-23 + Updated to MSigDB v7.2. + 10.0.3 2020-4-2 diff --git a/docs/v10/test.md b/docs/v10/test.md index 76557c7..f424e45 100644 --- a/docs/v10/test.md +++ b/docs/v10/test.md @@ -259,6 +259,11 @@ R-3.2 +10.0.4 +2020-9-23 +Updated to MSigDB v7.2. + + 10.0.3 2020-4-2 Updated to MSigDB v7.1. diff --git a/manifest b/manifest index 38e9d4a..5d068a4 100644 --- a/manifest +++ b/manifest @@ -11,7 +11,7 @@ privacy=public userid=GenePattern quality=production taskType=Projection -version=Updated to MSigDB v7.1. +version=Updated to MSigDB v7.2. cpuType=any os=any LSID=urn\:lsid\:broad.mit.edu\:cancer.software.genepattern.module.analysis\:00270\:999999999 @@ -50,7 +50,7 @@ p3_optional= p3_prefix= p3_prefix_when_specified= p3_type=java.io.File -p3_value=ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c1.all.v7.1.symbols.gmt\=c1.all.v7.1.symbols.gmt [Positional];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.all.v7.1.symbols.gmt\=c2.all.v7.1.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cgp.v7.1.symbols.gmt\=c2.cgp.v7.1.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.v7.1.symbols.gmt\=c2.cp.v7.1.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.biocarta.v7.1.symbols.gmt\=c2.cp.biocarta.v7.1.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.kegg.v7.1.symbols.gmt\=c2.cp.kegg.v7.1.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.pid.v7.1.symbols.gmt\=c2.cp.pid.v7.1.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.reactome.v7.1.symbols.gmt\=c2.cp.reactome.v7.1.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.all.v7.1.symbols.gmt\=c3.all.v7.1.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.v7.1.symbols.gmt\=c3.mir.v7.1.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.v7.1.symbols.gmt\=c3.tft.v7.1.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.all.v7.1.symbols.gmt\=c4.all.v7.1.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.cgn.v7.1.symbols.gmt\=c4.cgn.v7.1.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.cm.v7.1.symbols.gmt\=c4.cm.v7.1.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.all.v7.1.symbols.gmt\=c5.all.v7.1.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.bp.v7.1.symbols.gmt\=c5.bp.v7.1.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.cc.v7.1.symbols.gmt\=c5.cc.v7.1.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.mf.v7.1.symbols.gmt\=c5.mf.v7.1.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c6.all.v7.1.symbols.gmt\=c6.all.v7.1.symbols.gmt [Oncogenic Signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c7.all.v7.1.symbols.gmt\=c7.all.v7.1.symbols.gmt [Immunologic signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/h.all.v7.1.symbols.gmt\=h.all.v7.1.symbols.gmt [Hallmarks] +p3_value=ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c1.all.v7.2.symbols.gmt\=c1.all.v7.2.symbols.gmt [Positional];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.all.v7.2.symbols.gmt\=c2.all.v7.2.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cgp.v7.2.symbols.gmt\=c2.cgp.v7.2.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.v7.2.symbols.gmt\=c2.cp.v7.2.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.biocarta.v7.2.symbols.gmt\=c2.cp.biocarta.v7.2.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.kegg.v7.2.symbols.gmt\=c2.cp.kegg.v7.2.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.pid.v7.2.symbols.gmt\=c2.cp.pid.v7.2.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.reactome.v7.2.symbols.gmt\=c2.cp.reactome.v7.2.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.wikipathways.v7.2.symbols.gmt\=c2.cp.wikipathways.v7.2.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.all.v7.2.symbols.gmt\=c3.all.v7.2.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.v7.2.symbols.gmt\=c3.mir.v7.2.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.mirdb.v7.2.symbols.gmt\=c3.mir.mirdb.v7.2.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.mir_legacy.v7.2.symbols.gmt\=c3.mir.mir_legacy.v7.2.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.v7.2.symbols.gmt\=c3.tft.v7.2.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.gtrd.v7.2.symbols.gmt\=c3.tft.gtrd.v7.2.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.tft_legacy.v7.2.symbols.gmt\=c3.tft.tft_legacy.v7.2.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.all.v7.2.symbols.gmt\=c4.all.v7.2.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.cgn.v7.2.symbols.gmt\=c4.cgn.v7.2.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.cm.v7.2.symbols.gmt\=c4.cm.v7.2.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.all.v7.2.symbols.gmt\=c5.all.v7.2.symbols.gmt [Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.v7.2.symbols.gmt\=c5.go.v7.2.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.bp.v7.2.symbols.gmt\=c5.go.bp.v7.2.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.cc.v7.2.symbols.gmt\=c5.go.cc.v7.2.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.mf.v7.2.symbols.gmt\=c5.go.mf.v7.2.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.hpo.v7.2.symbols.gmt\=c5.hpo.v7.2.symbols.gmt [Human Phenotype Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c6.all.v7.2.symbols.gmt\=c6.all.v7.2.symbols.gmt [Oncogenic Signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c7.all.v7.2.symbols.gmt\=c7.all.v7.2.symbols.gmt [Immunologic signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c8.all.v7.2.symbols.gmt\=c8.all.v7.2.symbols.gmt [cell type signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/h.all.v7.2.symbols.gmt\=h.all.v7.2.symbols.gmt [Hallmarks] p4_default_value=Name p4_description=Specifies the gct data column containing gene symbols. In most cases this will be "Column 1". diff --git a/release.properties b/release.properties index 63eb940..eb0664d 100644 --- a/release.properties +++ b/release.properties @@ -1,5 +1,5 @@ -#Thu, 02 Apr 2020 08:55:20 +0900 +#Wed, 23 Sep 2020 13:06:54 +0900 LSID.noVersion=urn\:lsid\:broad.mit.edu\:cancer.software.genepattern.module.analysis\:00270 release.version=10.0 -build.number=3 -build.timestamp=Thu, 2 Apr 2020 08\:55\:20 +0900 +build.number=4 +build.timestamp=Wed, 23 Sep 2020 13\:06\:54 +0900