-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathpublications.html
1062 lines (1024 loc) · 64.4 KB
/
publications.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
<!DOCTYPE html>
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
<meta charset="utf-8">
<meta name="generator" content="quarto-1.5.47">
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
<meta name="author" content="Alex Sanchez-Pla">
<meta name="dcterms.date" content="2024-07-11">
<title>Data mining on GRBio (2023) publications list</title>
<style>
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
div.columns{display: flex; gap: min(4vw, 1.5em);}
div.column{flex: auto; overflow-x: auto;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
ul.task-list li input[type="checkbox"] {
width: 0.8em;
margin: 0 0.8em 0.2em -1em; /* quarto-specific, see https://github.com/quarto-dev/quarto-cli/issues/4556 */
vertical-align: middle;
}
/* CSS for syntax highlighting */
pre > code.sourceCode { white-space: pre; position: relative; }
pre > code.sourceCode > span { line-height: 1.25; }
pre > code.sourceCode > span:empty { height: 1.2em; }
.sourceCode { overflow: visible; }
code.sourceCode > span { color: inherit; text-decoration: inherit; }
div.sourceCode { margin: 1em 0; }
pre.sourceCode { margin: 0; }
@media screen {
div.sourceCode { overflow: auto; }
}
@media print {
pre > code.sourceCode { white-space: pre-wrap; }
pre > code.sourceCode > span { display: inline-block; text-indent: -5em; padding-left: 5em; }
}
pre.numberSource code
{ counter-reset: source-line 0; }
pre.numberSource code > span
{ position: relative; left: -4em; counter-increment: source-line; }
pre.numberSource code > span > a:first-child::before
{ content: counter(source-line);
position: relative; left: -1em; text-align: right; vertical-align: baseline;
border: none; display: inline-block;
-webkit-touch-callout: none; -webkit-user-select: none;
-khtml-user-select: none; -moz-user-select: none;
-ms-user-select: none; user-select: none;
padding: 0 4px; width: 4em;
}
pre.numberSource { margin-left: 3em; padding-left: 4px; }
div.sourceCode
{ }
@media screen {
pre > code.sourceCode > span > a:first-child::before { text-decoration: underline; }
}
/* CSS for citations */
div.csl-bib-body { }
div.csl-entry {
clear: both;
margin-bottom: 0em;
}
.hanging-indent div.csl-entry {
margin-left:2em;
text-indent:-2em;
}
div.csl-left-margin {
min-width:2em;
float:left;
}
div.csl-right-inline {
margin-left:2em;
padding-left:1em;
}
div.csl-indent {
margin-left: 2em;
}</style>
<script src="publications_files/libs/clipboard/clipboard.min.js"></script>
<script src="publications_files/libs/quarto-html/quarto.js"></script>
<script src="publications_files/libs/quarto-html/popper.min.js"></script>
<script src="publications_files/libs/quarto-html/tippy.umd.min.js"></script>
<script src="publications_files/libs/quarto-html/anchor.min.js"></script>
<link href="publications_files/libs/quarto-html/tippy.css" rel="stylesheet">
<link href="publications_files/libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles">
<script src="publications_files/libs/bootstrap/bootstrap.min.js"></script>
<link href="publications_files/libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
<link href="publications_files/libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="light">
<script src="publications_files/libs/kePrint-0.0.1/kePrint.js"></script>
<link href="publications_files/libs/lightable-0.0.1/lightable.css" rel="stylesheet">
</head>
<body class="fullcontent">
<div id="quarto-content" class="page-columns page-rows-contents page-layout-article">
<main class="content" id="quarto-document-content">
<header id="title-block-header" class="quarto-title-block default">
<div class="quarto-title">
<h1 class="title">Data mining on GRBio (2023) publications list</h1>
</div>
<div class="quarto-title-meta">
<div>
<div class="quarto-title-meta-heading">Author</div>
<div class="quarto-title-meta-contents">
<p>Alex Sanchez-Pla </p>
</div>
</div>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">July 11, 2024</p>
</div>
</div>
</div>
</header>
<section id="introduction" class="level1">
<h1>Introduction</h1>
<p>This document shows how to perform some exploratory analysis of <a href="http://grbio.upc.edu">GRBio resarch group</a> production during 2023 and 2024 through the analysis of a bibtex file containing diverse type of references.</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(bib2df)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stderr">
<pre><code>Warning: package 'bib2df' was built under R version 4.4.1</code></pre>
</div>
<div class="sourceCode cell-code" id="cb3"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(dplyr)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stderr">
<pre><code>
Adjuntando el paquete: 'dplyr'</code></pre>
</div>
<div class="cell-output cell-output-stderr">
<pre><code>The following objects are masked from 'package:stats':
filter, lag</code></pre>
</div>
<div class="cell-output cell-output-stderr">
<pre><code>The following objects are masked from 'package:base':
intersect, setdiff, setequal, union</code></pre>
</div>
<div class="sourceCode cell-code" id="cb7"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb7-1"><a href="#cb7-1" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(tidyr)</span>
<span id="cb7-2"><a href="#cb7-2" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(tidytext)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stderr">
<pre><code>Warning: package 'tidytext' was built under R version 4.4.1</code></pre>
</div>
<div class="sourceCode cell-code" id="cb9"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb9-1"><a href="#cb9-1" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(ggplot2)</span>
<span id="cb9-2"><a href="#cb9-2" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(tidytext)</span>
<span id="cb9-3"><a href="#cb9-3" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(wordcloud)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stderr">
<pre><code>Warning: package 'wordcloud' was built under R version 4.4.1</code></pre>
</div>
<div class="cell-output cell-output-stderr">
<pre><code>Cargando paquete requerido: RColorBrewer</code></pre>
</div>
<div class="sourceCode cell-code" id="cb12"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb12-1"><a href="#cb12-1" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(openxlsx)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stderr">
<pre><code>Warning: package 'openxlsx' was built under R version 4.4.1</code></pre>
</div>
<div class="sourceCode cell-code" id="cb14"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb14-1"><a href="#cb14-1" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(readr)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stderr">
<pre><code>Warning: package 'readr' was built under R version 4.4.1</code></pre>
</div>
<div class="sourceCode cell-code" id="cb16"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb16-1"><a href="#cb16-1" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(kableExtra)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stderr">
<pre><code>
Adjuntando el paquete: 'kableExtra'</code></pre>
</div>
<div class="cell-output cell-output-stderr">
<pre><code>The following object is masked from 'package:dplyr':
group_rows</code></pre>
</div>
</div>
</section>
<section id="get-the-data" class="level1">
<h1>Get the data</h1>
<div class="cell">
<div class="sourceCode cell-code" id="cb19"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb19-1"><a href="#cb19-1" aria-hidden="true" tabindex="-1"></a><span class="co"># Leer el archivo .bib</span></span>
<span id="cb19-2"><a href="#cb19-2" aria-hidden="true" tabindex="-1"></a><span class="co"># Convertir el archivo .bib a un dataframe</span></span>
<span id="cb19-3"><a href="#cb19-3" aria-hidden="true" tabindex="-1"></a>bibfile <span class="ot"><-</span> <span class="st">"Articles/GRBioUB_refsAll_202324.bib"</span></span>
<span id="cb19-4"><a href="#cb19-4" aria-hidden="true" tabindex="-1"></a>bib_df <span class="ot"><-</span> <span class="fu">bib2df</span>(bibfile)</span>
<span id="cb19-5"><a href="#cb19-5" aria-hidden="true" tabindex="-1"></a><span class="co"># str(bib_df)</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section>
<section id="basic-information" class="level1">
<h1>Basic information</h1>
<section id="number-of-entries" class="level2">
<h2 class="anchored" data-anchor-id="number-of-entries">Number of entries</h2>
<div class="cell">
<div class="sourceCode cell-code" id="cb20"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb20-1"><a href="#cb20-1" aria-hidden="true" tabindex="-1"></a>num_articles <span class="ot"><-</span> <span class="fu">nrow</span>(bib_df)</span>
<span id="cb20-2"><a href="#cb20-2" aria-hidden="true" tabindex="-1"></a>num_articles</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>[1] 44</code></pre>
</div>
</div>
</section>
<section id="number-of-authors-per-paper" class="level2">
<h2 class="anchored" data-anchor-id="number-of-authors-per-paper">Number of authors per paper</h2>
<div class="cell">
<div class="sourceCode cell-code" id="cb22"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb22-1"><a href="#cb22-1" aria-hidden="true" tabindex="-1"></a>bib_df <span class="ot"><-</span> bib_df <span class="sc">%>%</span></span>
<span id="cb22-2"><a href="#cb22-2" aria-hidden="true" tabindex="-1"></a> <span class="fu">mutate</span>(<span class="at">num_authors =</span> <span class="fu">sapply</span>(AUTHOR, <span class="cf">function</span>(x) <span class="fu">length</span>(<span class="fu">unlist</span>(<span class="fu">strsplit</span>(x, <span class="st">" and "</span>))))) </span>
<span id="cb22-3"><a href="#cb22-3" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb22-4"><a href="#cb22-4" aria-hidden="true" tabindex="-1"></a>numAuthors <span class="ot"><-</span> bib_df<span class="sc">$</span>num_authors[bib_df<span class="sc">$</span>num_authors <span class="sc"><</span> <span class="dv">100</span>]</span>
<span id="cb22-5"><a href="#cb22-5" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb22-6"><a href="#cb22-6" aria-hidden="true" tabindex="-1"></a><span class="fu">hist</span>(numAuthors, <span class="at">main=</span><span class="st">"Distribution of number of authors per paper"</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div>
<figure class="figure">
<p><img src="publications_files/figure-html/unnamed-chunk-4-1.png" class="img-fluid figure-img" width="672"></p>
</figure>
</div>
</div>
<div class="sourceCode cell-code" id="cb23"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb23-1"><a href="#cb23-1" aria-hidden="true" tabindex="-1"></a><span class="co"># summary(numAuthors)</span></span>
<span id="cb23-2"><a href="#cb23-2" aria-hidden="true" tabindex="-1"></a><span class="fu">t</span>(skimr<span class="sc">::</span><span class="fu">skim</span> (numAuthors))</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code> 1
skim_type "numeric"
skim_variable "data"
n_missing "0"
complete_rate "1"
numeric.mean "11.55814"
numeric.sd "10.66213"
numeric.p0 "3"
numeric.p25 "4"
numeric.p50 "9"
numeric.p75 "12.5"
numeric.p100 "59"
numeric.hist "▇▂▁▁▁" </code></pre>
</div>
</div>
</section>
<section id="journals" class="level2">
<h2 class="anchored" data-anchor-id="journals">Journals</h2>
<div class="cell">
<div class="sourceCode cell-code" id="cb25"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb25-1"><a href="#cb25-1" aria-hidden="true" tabindex="-1"></a>journal_freq <span class="ot"><-</span> bib_df <span class="sc">%>%</span></span>
<span id="cb25-2"><a href="#cb25-2" aria-hidden="true" tabindex="-1"></a> <span class="fu">filter</span>(<span class="sc">!</span><span class="fu">is.na</span>(JOURNAL)) <span class="sc">%>%</span></span>
<span id="cb25-3"><a href="#cb25-3" aria-hidden="true" tabindex="-1"></a> <span class="fu">count</span>(JOURNAL) <span class="sc">%>%</span></span>
<span id="cb25-4"><a href="#cb25-4" aria-hidden="true" tabindex="-1"></a> <span class="fu">arrange</span>(<span class="fu">desc</span>(n))</span>
<span id="cb25-5"><a href="#cb25-5" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb25-6"><a href="#cb25-6" aria-hidden="true" tabindex="-1"></a><span class="co"># Truncar nombres de revistas demasiado largos</span></span>
<span id="cb25-7"><a href="#cb25-7" aria-hidden="true" tabindex="-1"></a>journal_freq <span class="ot"><-</span> journal_freq <span class="sc">%>%</span></span>
<span id="cb25-8"><a href="#cb25-8" aria-hidden="true" tabindex="-1"></a> <span class="fu">mutate</span>(<span class="at">JOURNAL =</span> <span class="fu">ifelse</span>(<span class="fu">nchar</span>(JOURNAL) <span class="sc">></span> <span class="dv">50</span>, <span class="fu">paste0</span>(<span class="fu">substr</span>(JOURNAL, <span class="dv">1</span>, <span class="dv">50</span>), <span class="st">"..."</span>), JOURNAL))</span>
<span id="cb25-9"><a href="#cb25-9" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb25-10"><a href="#cb25-10" aria-hidden="true" tabindex="-1"></a>journal_freq <span class="sc">%>%</span></span>
<span id="cb25-11"><a href="#cb25-11" aria-hidden="true" tabindex="-1"></a> <span class="fu">kable</span>() <span class="sc">%>%</span></span>
<span id="cb25-12"><a href="#cb25-12" aria-hidden="true" tabindex="-1"></a> <span class="fu">kable_styling</span>(<span class="at">bootstrap_options =</span> <span class="fu">c</span>(<span class="st">"striped"</span>, <span class="st">"hover"</span>, <span class="st">"condensed"</span>, <span class="st">"responsive"</span>), <span class="at">full_width =</span> F)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div class="table-responsive">
<table class="table table-striped table-hover table-condensed caption-top table-sm small" data-quarto-postprocess="true">
<thead>
<tr class="header">
<th style="text-align: left;" data-quarto-table-cell-role="th">JOURNAL</th>
<th style="text-align: right;" data-quarto-table-cell-role="th">n</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td style="text-align: left;">World Journal of Advanced Research and Reviews</td>
<td style="text-align: right;">3</td>
</tr>
<tr class="even">
<td style="text-align: left;">Briefings in Bioinformatics</td>
<td style="text-align: right;">2</td>
</tr>
<tr class="odd">
<td style="text-align: left;">Frontiers in endocrinology</td>
<td style="text-align: right;">2</td>
</tr>
<tr class="even">
<td style="text-align: left;">Nutrients</td>
<td style="text-align: right;">2</td>
</tr>
<tr class="odd">
<td style="text-align: left;">AIMS Mathematics 2023 10:23218</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="even">
<td style="text-align: left;">Age and ageing</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="odd">
<td style="text-align: left;">American journal of perinatology</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="even">
<td style="text-align: left;">Applied Soft Computing</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="odd">
<td style="text-align: left;">Ciencia Latina Revista Científica Multidisciplinar</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="even">
<td style="text-align: left;">EClinicalMedicine</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="odd">
<td style="text-align: left;">Earth-Science Reviews</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="even">
<td style="text-align: left;">Entomological Science</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="odd">
<td style="text-align: left;">European journal of neurology</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="even">
<td style="text-align: left;">Food & function</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="odd">
<td style="text-align: left;">Frontiers in Immunology</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="even">
<td style="text-align: left;">Frontiers in Pediatrics</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="odd">
<td style="text-align: left;">Frontiers in nutrition</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="even">
<td style="text-align: left;">Genome Biology</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="odd">
<td style="text-align: left;">Insects</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="even">
<td style="text-align: left;">International Journal of Hygiene and Environmental...</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="odd">
<td style="text-align: left;">International journal of molecular sciences</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="even">
<td style="text-align: left;">Journal of gastrointestinal surgery : official jou...</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="odd">
<td style="text-align: left;">Journal of glaucoma</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="even">
<td style="text-align: left;">Methods in molecular biology (Clifton, N.J.)</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="odd">
<td style="text-align: left;">Molecular nutrition & food research</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="even">
<td style="text-align: left;">Neurobiology of stress</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="odd">
<td style="text-align: left;">Neurogastroenterology and motility</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="even">
<td style="text-align: left;">Neurology</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="odd">
<td style="text-align: left;">Neurology: Neuroimmunology and NeuroInflammation</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="even">
<td style="text-align: left;">New Insights on Principal Component Analysis</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="odd">
<td style="text-align: left;">PLOS One</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="even">
<td style="text-align: left;">Pediatric blood & cancer</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="odd">
<td style="text-align: left;">Pharmaceuticals (Basel, Switzerland)</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="even">
<td style="text-align: left;">RIED-Revista Iberoamericana de Educacion a Distanc...</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="odd">
<td style="text-align: left;">Revista Chilena de Salud Pública</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="even">
<td style="text-align: left;">Studies in Systems, Decision and Control</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="odd">
<td style="text-align: left;">Surgery for Obesity and Related Diseases</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="even">
<td style="text-align: left;">The EMBO Journal</td>
<td style="text-align: right;">1</td>
</tr>
<tr class="odd">
<td style="text-align: left;">Weed Research</td>
<td style="text-align: right;">1</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
<div class="cell">
<div class="sourceCode cell-code" id="cb26"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb26-1"><a href="#cb26-1" aria-hidden="true" tabindex="-1"></a>journal_plot <span class="ot"><-</span> <span class="fu">ggplot</span>(journal_freq, <span class="fu">aes</span>(<span class="at">x =</span> <span class="fu">reorder</span>(JOURNAL, <span class="sc">-</span>n), <span class="at">y =</span> n)) <span class="sc">+</span></span>
<span id="cb26-2"><a href="#cb26-2" aria-hidden="true" tabindex="-1"></a> <span class="fu">geom_bar</span>(<span class="at">stat =</span> <span class="st">"identity"</span>) <span class="sc">+</span></span>
<span id="cb26-3"><a href="#cb26-3" aria-hidden="true" tabindex="-1"></a> <span class="fu">coord_flip</span>() <span class="sc">+</span></span>
<span id="cb26-4"><a href="#cb26-4" aria-hidden="true" tabindex="-1"></a> <span class="fu">scale_y_continuous</span>(<span class="at">breaks =</span> scales<span class="sc">::</span><span class="fu">pretty_breaks</span>(<span class="at">n =</span> <span class="dv">4</span>)) <span class="sc">+</span></span>
<span id="cb26-5"><a href="#cb26-5" aria-hidden="true" tabindex="-1"></a> <span class="fu">labs</span>(<span class="at">title =</span> <span class="st">"Frecuencia de Publicaciones por Revista"</span>,</span>
<span id="cb26-6"><a href="#cb26-6" aria-hidden="true" tabindex="-1"></a> <span class="at">x =</span> <span class="st">"Revista"</span>,</span>
<span id="cb26-7"><a href="#cb26-7" aria-hidden="true" tabindex="-1"></a> <span class="at">y =</span> <span class="st">"Frecuencia"</span>) <span class="sc">+</span></span>
<span id="cb26-8"><a href="#cb26-8" aria-hidden="true" tabindex="-1"></a> <span class="fu">theme_minimal</span>()<span class="sc">+</span></span>
<span id="cb26-9"><a href="#cb26-9" aria-hidden="true" tabindex="-1"></a> <span class="fu">theme</span>(<span class="at">axis.text.x =</span> <span class="fu">element_text</span>(<span class="at">size =</span> <span class="dv">10</span>),</span>
<span id="cb26-10"><a href="#cb26-10" aria-hidden="true" tabindex="-1"></a> <span class="at">axis.text.y =</span> <span class="fu">element_text</span>(<span class="at">size =</span> <span class="dv">6</span>)) </span>
<span id="cb26-11"><a href="#cb26-11" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb26-12"><a href="#cb26-12" aria-hidden="true" tabindex="-1"></a><span class="fu">print</span>(journal_plot)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div>
<figure class="figure">
<p><img src="publications_files/figure-html/unnamed-chunk-6-1.png" class="img-fluid figure-img" width="672"></p>
</figure>
</div>
</div>
</div>
</section>
<section id="most-common-keywords" class="level2">
<h2 class="anchored" data-anchor-id="most-common-keywords">Most common keywords</h2>
<div class="cell">
<div class="sourceCode cell-code" id="cb27"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb27-1"><a href="#cb27-1" aria-hidden="true" tabindex="-1"></a>keywords <span class="ot"><-</span> bib_df <span class="sc">%>%</span></span>
<span id="cb27-2"><a href="#cb27-2" aria-hidden="true" tabindex="-1"></a> <span class="fu">filter</span>(<span class="sc">!</span><span class="fu">is.na</span>(KEYWORDS)) <span class="sc">%>%</span></span>
<span id="cb27-3"><a href="#cb27-3" aria-hidden="true" tabindex="-1"></a> <span class="fu">unnest_tokens</span>(word, KEYWORDS, <span class="at">token =</span> <span class="st">"regex"</span>, <span class="at">pattern =</span> <span class="st">","</span>) <span class="sc">%>%</span></span>
<span id="cb27-4"><a href="#cb27-4" aria-hidden="true" tabindex="-1"></a> <span class="fu">count</span>(word, <span class="at">sort =</span> <span class="cn">TRUE</span>)</span>
<span id="cb27-5"><a href="#cb27-5" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb27-6"><a href="#cb27-6" aria-hidden="true" tabindex="-1"></a>titlewords <span class="ot"><-</span> bib_df <span class="sc">%>%</span></span>
<span id="cb27-7"><a href="#cb27-7" aria-hidden="true" tabindex="-1"></a> <span class="fu">filter</span>(<span class="sc">!</span><span class="fu">is.na</span>(TITLE)) <span class="sc">%>%</span></span>
<span id="cb27-8"><a href="#cb27-8" aria-hidden="true" tabindex="-1"></a> <span class="fu">unnest_tokens</span>(word, TITLE, <span class="at">token =</span> <span class="st">"regex"</span>, <span class="at">pattern =</span> <span class="st">" "</span>) <span class="sc">%>%</span></span>
<span id="cb27-9"><a href="#cb27-9" aria-hidden="true" tabindex="-1"></a> <span class="fu">filter</span>(<span class="sc">!</span>word <span class="sc">%in%</span> stopwords<span class="sc">::</span><span class="fu">stopwords</span>(<span class="st">"en"</span>)) <span class="sc">%>%</span></span>
<span id="cb27-10"><a href="#cb27-10" aria-hidden="true" tabindex="-1"></a> <span class="fu">count</span>(word, <span class="at">sort =</span> <span class="cn">TRUE</span>)</span>
<span id="cb27-11"><a href="#cb27-11" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb27-12"><a href="#cb27-12" aria-hidden="true" tabindex="-1"></a><span class="co"># Generar la nube de palabras</span></span>
<span id="cb27-13"><a href="#cb27-13" aria-hidden="true" tabindex="-1"></a><span class="fu">wordcloud</span>(<span class="at">words =</span> keywords<span class="sc">$</span>word, <span class="at">freq =</span> keywords<span class="sc">$</span>n, <span class="at">min.freq =</span> <span class="dv">1</span>,</span>
<span id="cb27-14"><a href="#cb27-14" aria-hidden="true" tabindex="-1"></a> <span class="at">max.words =</span> <span class="dv">200</span>, <span class="at">random.order =</span> <span class="cn">FALSE</span>, <span class="at">colors =</span> <span class="fu">brewer.pal</span>(<span class="dv">8</span>, <span class="st">"Dark2"</span>))</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div>
<figure class="figure">
<p><img src="publications_files/figure-html/unnamed-chunk-7-1.png" class="img-fluid figure-img" width="672"></p>
</figure>
</div>
</div>
<div class="sourceCode cell-code" id="cb28"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb28-1"><a href="#cb28-1" aria-hidden="true" tabindex="-1"></a><span class="fu">wordcloud</span>(<span class="at">words =</span> titlewords<span class="sc">$</span>word, <span class="at">freq =</span> titlewords<span class="sc">$</span>n, <span class="at">min.freq =</span> <span class="dv">1</span>,</span>
<span id="cb28-2"><a href="#cb28-2" aria-hidden="true" tabindex="-1"></a> <span class="at">max.words =</span> <span class="dv">200</span>, <span class="at">random.order =</span> <span class="cn">FALSE</span>, <span class="at">colors =</span> <span class="fu">brewer.pal</span>(<span class="dv">8</span>, <span class="st">"Dark2"</span>))</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output-display">
<div>
<figure class="figure">
<p><img src="publications_files/figure-html/unnamed-chunk-7-2.png" class="img-fluid figure-img" width="672"></p>
</figure>
</div>
</div>
</div>
</section>
</section>
<section id="publications-2023-24" class="level1 unnumbered">
</section>
<div id="quarto-appendix" class="default"><section class="quarto-appendix-contents" role="doc-bibliography" id="quarto-bibliography"><h2 class="anchored quarto-appendix-heading">Publications 2023-24</h2><div id="refs" class="references csl-bib-body hanging-indent" data-entry-spacing="0" role="list">
<div id="ref-Adel2024" class="csl-entry" role="listitem">
Adel, Maja R., Ester Antón-Galindo, Edurne Gago-Garcia, Angela Arias-Dimas, Concepció Arenas, Rafael Artuch, Bru Cormand, and Noèlia Fernàndez-Castillo. 2024. <span>“Decreased Brain Serotonin in Rbfox1 Mutant Zebrafish and Partial Reversion of Behavioural Alterations by the SSRI Fluoxetine.”</span> <em>Pharmaceuticals (Basel, Switzerland)</em> 17 (February). <a href="https://doi.org/10.3390/PH17020254">https://doi.org/10.3390/PH17020254</a>.
</div>
<div id="ref-Anton2023" class="csl-entry" role="listitem">
Anton, Alfonso, David Serrano, Karen Nolivos, Gianluca Fatti, Natasa Zmuc, Carlos Crespo, Toni Monleon-Getino, et al. 2023. <span>“Cost-Effectiveness of Screening for Open Angle Glaucoma Compared with Opportunistic Case Finding.”</span> <em>Journal of Glaucoma</em> 32 (February): 72–79. <a href="https://doi.org/10.1097/IJG.0000000000002132">https://doi.org/10.1097/IJG.0000000000002132</a>.
</div>
<div id="ref-Ayala2023" class="csl-entry" role="listitem">
Ayala, Nicolas, Antonio Monleon-Getino, Jaume Canela-Soler, and Tomas Chadwick-Lobos. 2023. <span>“Random Forest Using Smartphone GPS in First Wave of COVID-19 in the Maule Region, Chile.”</span> <em>World Journal of Advanced Research and Reviews</em> 2023: 531–36. <a href="https://doi.org/10.30574/wjarr.2023.17.1.0098">https://doi.org/10.30574/wjarr.2023.17.1.0098</a>.
</div>
<div id="ref-Ayala2023d" class="csl-entry" role="listitem">
Ayala-Aldana, Nicolas, Antonio Monleon-Getino, Jaume Canela-Soler, Silvia Sancliment i Guitart, Carmen Serrano-Munuera, Nicolas Ayala-Aldana, Antonio Monleon-Getino, Jaume Canela-Soler, Silvia Sancliment i Guitart, and Carmen Serrano-Munuera. 2023. <span>“COVID-19 Temporal Dynamic as a Hospital Management Method: Case Study of the Martorell Hospital.”</span> <em>World Journal of Advanced Research and Reviews</em> 17 (January): 856–61. <a href="https://doi.org/10.30574/WJARR.2023.17.1.0067">https://doi.org/10.30574/WJARR.2023.17.1.0067</a>.
</div>
<div id="ref-Monleon2023y" class="csl-entry" role="listitem">
Ayala-Aldana, Nicolas, Antonio Monleon-Getino, Jaume Canela-Soler, Petia Radeva, Javier Rodenas, Nicolas Ayala-Aldana, Antonio Monleon-Getino, Jaume Canela-Soler, Petia Radeva, and Javier Rodenas. 2023. <span>“A Bootstrap Method Based on Linear Regression to Estimate COVID-19 Ecological Risk in Catalonia.”</span> <em>World Journal of Advanced Research and Reviews</em> 17 (January): 324–32. <a href="https://doi.org/10.30574/WJARR.2023.17.1.0047">https://doi.org/10.30574/WJARR.2023.17.1.0047</a>.
</div>
<div id="ref-Monleon2024z" class="csl-entry" role="listitem">
Ayala-Aldana, Nicolas, Antonio Monleon-Getino, Jaume Canela-Soler, and Erika Retamal-Contreras. 2023. <span>“Predicción Con Modelo ARIMA En Series Temporales de Salmonella Spp En Chile Entre 2014-2022.”</span> <em>Ciencia Latina Revista Científica Multidisciplinar</em> 7 (January): 1337–51. <a href="https://doi.org/10.37811/CL_RCM.V7I1.4484">https://doi.org/10.37811/CL_RCM.V7I1.4484</a>.
</div>
<div id="ref-Ayala2023e" class="csl-entry" role="listitem">
Ayala-Aldana, Nicolas, Antonio Monleón-Getino, and Jaume Canela Soler Jaume Canela Soler. 2023. <span>“Desafíos Para El Análisis Predictivo En El Pronóstico Clínico: Índice de Charlson Como Predictor Clásico En Epidemiología.”</span> <em>Revista Chilena de Salud Pública</em> 26 (July): 238. <a href="https://doi.org/10.5354/0719-5281.2022.71241">https://doi.org/10.5354/0719-5281.2022.71241</a>.
</div>
<div id="ref-Besalu2023a" class="csl-entry" role="listitem">
Besalú, Mireia, Giulia Binotto, Mireia Besalú, and Giulia Binotto. 2023. <span>“Time-Dependent Non-Homogeneous Stochastic Epidemic Model of SIR Type.”</span> <em>AIMS Mathematics 2023 10:23218</em> 8: 23218–46. <a href="https://doi.org/10.3934/MATH.20231181">https://doi.org/10.3934/MATH.20231181</a>.
</div>
<div id="ref-Campana2023" class="csl-entry" role="listitem">
Campaña, María, Rafael del Hoyo, Antonio Monleón-Getino, and Javier Checa. 2023. <span>“Predicting Legionella Contamination in Cooling Towers and Evaporative Condensers from Microbiological and Physicochemical Parameters.”</span> <em>International Journal of Hygiene and Environmental Health</em> 248 (March). <a href="https://doi.org/10.1016/j.ijheh.2023.114117">https://doi.org/10.1016/j.ijheh.2023.114117</a>.
</div>
<div id="ref-Minarro2023b" class="csl-entry" role="listitem">
Carmona-Maurici, Júlia, Araceli Rosa, Natalia Azcona-Granada, Elionora Peña, David Ricart-Jané, Anna Viñas, Maria Dolores López-Tejero, et al. 2023. <span>“Irisin as a Novel Biomarker of Subclinical Atherosclerosis in Severe Obesity.”</span> <em>International Journal of Molecular Sciences</em> 24 (May). <a href="https://doi.org/10.3390/IJMS24098171">https://doi.org/10.3390/IJMS24098171</a>.
</div>
<div id="ref-Verdaguer2023" class="csl-entry" role="listitem">
Corral-Pujol, Marta, Berta Arpa, Estela Rosell-Mases, Leire Egia-Mendikute, Conchi Mora, Thomas Stratmann, Alex Sanchez, et al. 2023b. <span>“NOD Mouse Dorsal Root Ganglia Display Morphological and Gene Expression Defects Before and During Autoimmune Diabetes Development.”</span> <em>Frontiers in Endocrinology</em> 14. <a href="https://doi.org/10.3389/FENDO.2023.1176566">https://doi.org/10.3389/FENDO.2023.1176566</a>.
</div>
<div id="ref-SanchezPla2023e" class="csl-entry" role="listitem">
———, et al. 2023a. <span>“NOD Mouse Dorsal Root Ganglia Display Morphological and Gene Expression Defects Before and During Autoimmune Diabetes Development.”</span> <em>Frontiers in Endocrinology</em> 14. <a href="https://doi.org/10.3389/FENDO.2023.1176566">https://doi.org/10.3389/FENDO.2023.1176566</a>.
</div>
<div id="ref-SanchezPla2023c" class="csl-entry" role="listitem">
David, Romain, Arina Rybina, Jean‐Marie Burel, Jean‐Karim Heriche, Pauline Audergon, Jan‐Willem Boiten, Frederik Coppens, et al. 2023. <span>“<span>‘Be Sustainable’</span>: EOSC‐life Recommendations for Implementation of FAIR Principles in Life Science Data Handling.”</span> <em>The EMBO Journal</em> 42 (December). <a href="https://doi.org/10.15252/EMBJ.2023115008">https://doi.org/10.15252/EMBJ.2023115008</a>.
</div>
<div id="ref-Delclos2023" class="csl-entry" role="listitem">
Delclòs, Xavier, Enrique Peñalver, Eduardo Barrón, David Peris, David A. Grimaldi, Michael Holz, Conrad C. Labandeira, et al. 2023. <span>“Amber and the Cretaceous Resinous Interval.”</span> <em>Earth-Science Reviews</em> 243 (August). <a href="https://doi.org/10.1016/J.EARSCIREV.2023.104486">https://doi.org/10.1016/J.EARSCIREV.2023.104486</a>.
</div>
<div id="ref-Greoraci2023" class="csl-entry" role="listitem">
Fernández, Angela Gregoraci, Juan José Comuñas Gómez, Olalla Rodriguez-Losada, Vanessa Flores España, Anna Gros Turpin, Santiago Pérez Hoyos, and Félix Castillo Salinas. 2023. <span>“Nasal High-Flow for Weaning Preterm Newborns with Risk of Chronic Lung Disease from nCPAP.”</span> <em>American Journal of Perinatology</em> 40 (October): 937–44. <a href="https://doi.org/10.1055/S-0041-1732422">https://doi.org/10.1055/S-0041-1732422</a>.
</div>
<div id="ref-SanchezPla2023g" class="csl-entry" role="listitem">
Fissolo, Nicolas, Laura Calvo-Barreiro, Herena Eixarch, Ursula Boschert, Luisa M. Villar, Lucienne Costa-Frossard, Mireia Ferrer, et al. 2023. <span>“Molecular Signature Associated with Cladribine Treatment in Patients with Multiple Sclerosis.”</span> <em>Frontiers in Immunology</em> 14 (July): 1233546. <a href="https://doi.org/10.3389/FIMMU.2023.1233546/BIBTEX">https://doi.org/10.3389/FIMMU.2023.1233546/BIBTEX</a>.
</div>
<div id="ref-SanchezPla2023d" class="csl-entry" role="listitem">
Fissolo, Nicolás, Agustin Pappolla, Jordi Rio, Luisa M. Villar, Santiago Perez-Hoyos, Alex Sanchez, Lucía Gutierrez, Xavier Montalban, and Manuel Comabella. 2023. <span>“Serum Levels of CXCL13 Are Associated with Teriflunomide Response in Patients with Multiple Sclerosis.”</span> <em>Neurology: Neuroimmunology and NeuroInflammation</em> 10 (January). <a href="https://doi.org/10.1212/NXI.0000000000200050/ASSET/73FA320B-3EE4-4244-B8A2-CE6C5679D0C7/ASSETS/GRAPHIC/NXI.0000000000200050TU1.JPEG">https://doi.org/10.1212/NXI.0000000000200050/ASSET/73FA320B-3EE4-4244-B8A2-CE6C5679D0C7/ASSETS/GRAPHIC/NXI.0000000000200050TU1.JPEG</a>.
</div>
<div id="ref-SanchezPla2023b" class="csl-entry" role="listitem">
Flores-Arriaga, Joel, María C. Aso, Arantzazu Izagirre, Ami D. Sperber, Olafur S. Palsson, Shrikant I. Bangdiwala, Ángel Lanas, et al. 2023. <span>“Prevalence and Description of Disorders of Gut-Brain Interaction in Spain According to the Results of the Rome Foundation Global Epidemiology Study.”</span> <em>Neurogastroenterology and Motility</em> 35 (June). <a href="https://doi.org/10.1111/NMO.14582">https://doi.org/10.1111/NMO.14582</a>.
</div>
<div id="ref-Garrido2023" class="csl-entry" role="listitem">
Garrido-Martín, Diego, Miquel Calvo, Ferran Reverter, and Roderic Guigó. 2023. <span>“A Fast Non-Parametric Test of Association for Multiple Traits.”</span> <em>Genome Biology</em> 24 (December): 1–32. <a href="https://doi.org/10.1186/S13059-023-03076-8/FIGURES/4">https://doi.org/10.1186/S13059-023-03076-8/FIGURES/4</a>.
</div>
<div id="ref-SanchezPla2023k" class="csl-entry" role="listitem">
Geertsema, J., M. Kratochvil, R. González-Domínguez, S. Lefèvre-Arbogast, D. Y. Low, A. Du Preez, H. Lee, et al. 2024. <span>“Coffee Polyphenols Ameliorate Early-Life Stress-Induced Cognitive Deficits in Male Mice.”</span> <em>Neurobiology of Stress</em> 31 (July). <a href="https://doi.org/10.1016/J.YNSTR.2024.100641">https://doi.org/10.1016/J.YNSTR.2024.100641</a>.
</div>
<div id="ref-SanchezPla2023f" class="csl-entry" role="listitem">
Gregori, Josep, Àlex Sánchez, and Josep Villanueva. 2023. <span>“msmsEDA & msmsTests: Label-Free Differential Expression by Spectral Counts.”</span> <em>Methods in Molecular Biology (Clifton, N.J.)</em> 2426: 197–242. <a href="https://doi.org/10.1007/978-1-0716-1967-4_10">https://doi.org/10.1007/978-1-0716-1967-4_10</a>.
</div>
<div id="ref-H2023" class="csl-entry" role="listitem">
H, Mostafa, Meroño T, Miñarro A, Sanchez-Pla A, Lanuza F, Zamora-Ros R, Rostgaard-Hansen AL, et al. 2023. <span>“Dietary Sources of Anthocyanins and Their Association with Metabolome Biomarkers and Cardiometabolic Risk Factors in an Observational Study.”</span> <em>Nutrients</em>, July. <a href="https://doi.org/10.3390/nu15051208">https://doi.org/10.3390/nu15051208</a>.
</div>
<div id="ref-Irigoien2023" class="csl-entry" role="listitem">
Irigoien, Itziar, Susana Ferreiro, Basilio Sierra, and Concepción Arenas. 2023. <span>“Fuzzy Classification with Distance-Based Depth Prototypes: High-Dimensional Unsupervised and/or Supervised Problems.”</span> <em>Applied Soft Computing</em> 148 (November): 110917. <a href="https://doi.org/10.1016/J.ASOC.2023.110917">https://doi.org/10.1016/J.ASOC.2023.110917</a>.
</div>
<div id="ref-Koenig2023" class="csl-entry" role="listitem">
Koenig, Franz, Cécile Spiertz, Daniel Millar, Sarai Rodríguez-Navarro, Núria Machín, Ann Van Dessel, Joan Genescà, et al. 2023. <span>“Current State-of-the-Art and Gaps in Platform Trials: 10 Things You Should Know, Insights from EU-PEARL.”</span> <em>EClinicalMedicine</em> 67 (January). <a href="https://doi.org/10.1016/J.ECLINM.2023.102384">https://doi.org/10.1016/J.ECLINM.2023.102384</a>.
</div>
<div id="ref-Madrenas2020" class="csl-entry" role="listitem">
Madrenas, Raquel, Joan Balanyà, Concepció Arenas, Manhaz Khadem, and Francesc Mestres. 2020. <span>“Global Warming and Chromosomal Inversion Adaptation in Isolated Islands: Drosophila Subobscura Populations from Madeira.”</span> <em>Entomological Science</em> 23 (March): 74–85. <a href="https://doi.org/10.1111/ENS.12398">https://doi.org/10.1111/ENS.12398</a>.
</div>
<div id="ref-Arenas2024a" class="csl-entry" role="listitem">
Mas-Bermejo, Patricia, Natalia Azcona-Granada, Elionora Peña, Albert Lecube, Andreea Ciudin, Rafael Simó, Alexis Luna, et al. 2024. <span>“Genetic Risk Score Based on Obesity-Related Genes and Progression in Weight Loss After Bariatric Surgery: A 60-Month Follow-up Study.”</span> <em>Surgery for Obesity and Related Diseases</em> 0. <a href="https://doi.org/10.1016/j.soard.2024.04.002">https://doi.org/10.1016/j.soard.2024.04.002</a>.
</div>
<div id="ref-SanchezPla202a4" class="csl-entry" role="listitem">
Midaglia, Luciana, Alex Rovira, Berta Miró, Jordi Río, Nicolás Fissolo, Joaquín Castilló, Alex Sánchez, Xavier Montalban, and Manuel Comabella. 2024. <span>“Association of Magnetic Resonance Imaging Phenotypes and Serum Biomarker Levels with Treatment Response and Long-Term Disease Outcomes in Multiple Sclerosis Patients.”</span> <em>European Journal of Neurology</em> 31 (January). <a href="https://doi.org/10.1111/ENE.16077">https://doi.org/10.1111/ENE.16077</a>.
</div>
<div id="ref-Baena2024" class="csl-entry" role="listitem">
Miret, Sergi Baena, Ferran Reverter Comes, and Esteban Vegas Lozano. 2024. <span>“A Framework for Block-Wise Missing Data in Multi-Omics.”</span> <em>PLOS One</em>, July.
</div>
<div id="ref-Monleon2023t" class="csl-entry" role="listitem">
Monleón-Getino, A., G. Pujol-Muncunill, J. Méndez Viera, L. Álvarez Carnero, W. Sanseverino, A. Paytuví-Gallart, and J. Martín de Carpí. 2023. <span>“A Pilot Study of the Use of the Oral and Faecal Microbiota for the Diagnosis of Ulcerative Colitis and Crohn’s Disease in a Paediatric Population.”</span> <em>Frontiers in Pediatrics</em> 11 (November): 1220976. <a href="https://doi.org/10.3389/FPED.2023.1220976">https://doi.org/10.3389/FPED.2023.1220976</a>.
</div>
<div id="ref-SanchezPla2023a" class="csl-entry" role="listitem">
Mostafa, Hamza, Tomás Meroño, Antonio Miñarro, Alex Sánchez-Pla, Fabián Lanuza, Raul Zamora-Ros, Agnetha Linn Rostgaard-Hansen, et al. 2023. <span>“Dietary Sources of Anthocyanins and Their Association with Metabolome Biomarkers and Cardiometabolic Risk Factors in an Observational Study.”</span> <em>Nutrients</em> 15 (March): 1208. <a href="https://doi.org/10.3390/NU15051208/S1">https://doi.org/10.3390/NU15051208/S1</a>.
</div>
<div id="ref-Salicru2024b" class="csl-entry" role="listitem">
Palma-Guillén, Alfred, Miquel Salicrú, Ariadna Nadal, Xavier Serrat, and Salvador Nogués. 2024. <span>“Non-Chemical Weed Management for Sustainable Rice Production in the Ebro Delta.”</span> <em>Weed Research</em> 64 (June): 227–36. <a href="https://doi.org/10.1111/WRE.12628">https://doi.org/10.1111/WRE.12628</a>.
</div>
<div id="ref-Pana2024" class="csl-entry" role="listitem">
Peña, Elionora, Patricia Mas-Bermejo, Albert Lecube, Andreea Ciudin, Concepción Arenas, Rafael Simó, Mercedes Rigla, Assumpta Caixàs, and Araceli Rosa. 2024. <span>“Use of Polygenic Risk Scores to Assess Weight Loss After Bariatric Surgery: A 5-Year Follow-up Study.”</span> <em>Journal of Gastrointestinal Surgery : Official Journal of the Society for Surgery of the Alimentary Tract</em>, May. <a href="https://doi.org/10.1016/J.GASSUR.2024.05.029">https://doi.org/10.1016/J.GASSUR.2024.05.029</a>.
</div>
<div id="ref-Pons2023" class="csl-entry" role="listitem">
Pons, Joana Villalonga, Mireia Besalú, Anna Samà Camí, and Teresa Sancho-Vinuesa. 2023. <span>“Online Engineering Students’ Learning Strategies.”</span> <em>RIED-Revista Iberoamericana de Educacion a Distancia</em> 26 (July): 237–56. <a href="https://doi.org/10.5944/RIED.26.2.36257">https://doi.org/10.5944/RIED.26.2.36257</a>.
</div>
<div id="ref-SanchezPla2023m" class="csl-entry" role="listitem">
Preez, Andrea Du, Sophie Lefèvre-Arbogast, Raúl González-Domínguez, Vikki Houghton, Chiara de Lucia, Hyunah Lee, Dorrain Y. Low, et al. 2024. <span>“Association of Dietary and Nutritional Factors with Cognitive Decline, Dementia, and Depressive Symptomatology in Older Individuals According to a Neurogenesis-Centred Biological Susceptibility to Brain Ageing.”</span> <em>Age and Ageing</em> 53 (May): ii47–59. <a href="https://doi.org/10.1093/AGEING/AFAE042">https://doi.org/10.1093/AGEING/AFAE042</a>.
</div>
<div id="ref-Velasco2024" class="csl-entry" role="listitem">
Puyó, Pablo Velasco, Alfredo Tagarro, Susana Garcia-Obregon, Olatz Villate Bejarano, Cinta Moraleda, Jorge Huerta Aragonés, Eduardo J. Bardón Cancho, et al. 2024. <span>“Cancer Is Not a Risk Factor for Severe COVID-19 in Children, Except in Patients with Recent Allogeneic Hematopoietic Stem Cell Transplantation or Comorbidities.”</span> <em>Pediatric Blood & Cancer</em> 71. <a href="https://doi.org/10.1002/PBC.31120">https://doi.org/10.1002/PBC.31120</a>.
</div>
<div id="ref-Minarr2023" class="csl-entry" role="listitem">
Rio-Aige, Karla, Aina Fernández-Bargalló, Esteban Vegas-Lozano, Antonio Miñarro-Alonso, Margarida Castell, Marta Selma-Royo, Cecilia Martínez-Costa, Maria José Rodríguez-Lagunas, Maria Carmen Collado, and Francisco José Pérez-Cano. 2023. <span>“Breast Milk Immune Composition Varies During the Transition Stage of Lactation: Characterization of Immunotypes in the MAMI Cohort.”</span> <em>Frontiers in Nutrition</em> 10. <a href="https://doi.org/10.3389/FNUT.2023.1252815">https://doi.org/10.3389/FNUT.2023.1252815</a>.
</div>
<div id="ref-RodriguezLuna2024" class="csl-entry" role="listitem">
Rodriguez-Luna, David, Olalla Pancorbo, Laura Llull, Yolanda Silva, Luis Prats-Sanchez, Marián Muchada, Salvatore Rudilosso, et al. 2024. <span>“Effects of Achieving Rapid, Intensive, and Sustained Blood Pressure Reduction in Intracerebral Hemorrhage Expansion and Functional Outcome.”</span> <em>Neurology</em> 102 (May): e209244. <a href="https://doi.org/10.1212/WNL.0000000000209244">https://doi.org/10.1212/WNL.0000000000209244</a>.
</div>
<div id="ref-SanchezPla2023i" class="csl-entry" role="listitem">
Rujano, Maria A., Jan Willem Boiten, Christian Ohmann, Steve Canham, Sergio Contrino, Romain David, Jonathan Ewbank, et al. 2024. <span>“Sharing Sensitive Data in Life Sciences: An Overview of Centralized and Federated Approaches.”</span> <em>Briefings in Bioinformatics</em> 25 (May). <a href="https://doi.org/10.1093/BIB/BBAE262">https://doi.org/10.1093/BIB/BBAE262</a>.
</div>
<div id="ref-Salicru2023a" class="csl-entry" role="listitem">
Salicrú, Miquel, Ferran Reverter, Mireia Besalú, and Moises Burset. 2023. <span>“Inference with Median Distances: An Alternative to Reduce the Influence of Outlier Populations.”</span> <em>Studies in Systems, Decision and Control</em> 445: 439–46. <a href="https://doi.org/10.1007/978-3-031-04137-2_37">https://doi.org/10.1007/978-3-031-04137-2_37</a>.
</div>
<div id="ref-SanchezPla2023h" class="csl-entry" role="listitem">
Tor-Roca, Alba, Alex Sánchez-Pla, Aniko Korosi, Mercè Pallàs, Paul J. Lucassen, Pol Castellano-Escuder, Ludwig Aigner, et al. 2023. <span>“A Mediterranean Diet-Based Metabolomic Score and Cognitive Decline in Older Adults: A Case-Control Analysis Nested Within the Three-City Cohort Study.”</span> <em>Molecular Nutrition & Food Research</em>. <a href="https://doi.org/10.1002/MNFR.202300271">https://doi.org/10.1002/MNFR.202300271</a>.
</div>
<div id="ref-SanchezPla2023j" class="csl-entry" role="listitem">
Unión-Caballero, Andrea, Tomás Meroño, Raúl Zamora-Ros, Agnetha Linn Rostgaard-Hansen, Antonio Miñarro, Alex Sánchez-Pla, Núria Estanyol-Torres, et al. 2024. <span>“Metabolome Biomarkers Linking Dietary Fibre Intake with Cardiometabolic Effects: Results from the Danish Diet, Cancer and Health-Next Generations MAX Study.”</span> <em>Food & Function</em> 15 (January): 1643–54. <a href="https://doi.org/10.1039/D3FO04763F">https://doi.org/10.1039/D3FO04763F</a>.
</div>
<div id="ref-Vegas2023" class="csl-entry" role="listitem">
Vegas, Esteban, Lluís Serra, Ferran Reverter, Josep Maria Oller, Esteban Vegas, Lluís Serra, Ferran Reverter, and Josep Maria Oller. 2023. <span>“Unveiling Chromosome Changes Compatible with Climate Warming.”</span> <em>New Insights on Principal Component Analysis</em>, November. <a href="https://doi.org/10.5772/INTECHOPEN.1003769">https://doi.org/10.5772/INTECHOPEN.1003769</a>.
</div>
<div id="ref-Zawiska2023" class="csl-entry" role="listitem">
Zawisza-Álvarez, Michał, Jesús Peñuela-Melero, Esteban Vegas, Ferran Reverter, Jordi Garcia-Fernàndez, and Carlos Herrera-Úbeda. 2024. <span>“Exploring Functional Conservation in Silico: A New Machine Learning Approach to RNA-Editing.”</span> <em>Briefings in Bioinformatics</em> 25 (May): 332. <a href="https://doi.org/10.1093/BIB/BBAE332">https://doi.org/10.1093/BIB/BBAE332</a>.
</div>
<div id="ref-Zivanovic2023" class="csl-entry" role="listitem">
Zivanovic, Goran, Concepció Arenas, and Francesc Mestres. 2023. <span>“The Adaptive Value of Chromosomal Inversions and Climatic Change—Studies on the Natural Populations of Drosophila Subobscura from the Balkans.”</span> <em>Insects</em> 14 (July): 596. <a href="https://doi.org/10.3390/INSECTS14070596/S1">https://doi.org/10.3390/INSECTS14070596/S1</a>.
</div>
</div></section></div></main>
<!-- /main column -->
<script id="quarto-html-after-body" type="application/javascript">
window.document.addEventListener("DOMContentLoaded", function (event) {
const toggleBodyColorMode = (bsSheetEl) => {
const mode = bsSheetEl.getAttribute("data-mode");
const bodyEl = window.document.querySelector("body");
if (mode === "dark") {
bodyEl.classList.add("quarto-dark");
bodyEl.classList.remove("quarto-light");
} else {
bodyEl.classList.add("quarto-light");
bodyEl.classList.remove("quarto-dark");
}
}
const toggleBodyColorPrimary = () => {
const bsSheetEl = window.document.querySelector("link#quarto-bootstrap");
if (bsSheetEl) {
toggleBodyColorMode(bsSheetEl);
}
}
toggleBodyColorPrimary();
const icon = "";
const anchorJS = new window.AnchorJS();
anchorJS.options = {
placement: 'right',
icon: icon
};
anchorJS.add('.anchored');
const isCodeAnnotation = (el) => {
for (const clz of el.classList) {
if (clz.startsWith('code-annotation-')) {
return true;
}
}
return false;
}
const onCopySuccess = function(e) {
// button target
const button = e.trigger;
// don't keep focus
button.blur();
// flash "checked"
button.classList.add('code-copy-button-checked');
var currentTitle = button.getAttribute("title");
button.setAttribute("title", "Copied!");
let tooltip;
if (window.bootstrap) {
button.setAttribute("data-bs-toggle", "tooltip");
button.setAttribute("data-bs-placement", "left");
button.setAttribute("data-bs-title", "Copied!");
tooltip = new bootstrap.Tooltip(button,
{ trigger: "manual",
customClass: "code-copy-button-tooltip",
offset: [0, -8]});
tooltip.show();
}
setTimeout(function() {
if (tooltip) {
tooltip.hide();
button.removeAttribute("data-bs-title");
button.removeAttribute("data-bs-toggle");
button.removeAttribute("data-bs-placement");
}
button.setAttribute("title", currentTitle);
button.classList.remove('code-copy-button-checked');
}, 1000);
// clear code selection
e.clearSelection();
}
const getTextToCopy = function(trigger) {
const codeEl = trigger.previousElementSibling.cloneNode(true);
for (const childEl of codeEl.children) {
if (isCodeAnnotation(childEl)) {
childEl.remove();
}
}
return codeEl.innerText;
}
const clipboard = new window.ClipboardJS('.code-copy-button:not([data-in-quarto-modal])', {
text: getTextToCopy
});
clipboard.on('success', onCopySuccess);
if (window.document.getElementById('quarto-embedded-source-code-modal')) {
// For code content inside modals, clipBoardJS needs to be initialized with a container option
// TODO: Check when it could be a function (https://github.com/zenorocha/clipboard.js/issues/860)
const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', {
text: getTextToCopy,
container: window.document.getElementById('quarto-embedded-source-code-modal')
});
clipboardModal.on('success', onCopySuccess);
}
var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
var mailtoRegex = new RegExp(/^mailto:/);
var filterRegex = new RegExp('/' + window.location.host + '/');
var isInternal = (href) => {
return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
}
// Inspect non-navigation links and adorn them if external
var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool):not(.about-link)');
for (var i=0; i<links.length; i++) {
const link = links[i];
if (!isInternal(link.href)) {
// undo the damage that might have been done by quarto-nav.js in the case of
// links that we want to consider external
if (link.dataset.originalHref !== undefined) {
link.href = link.dataset.originalHref;
}
}
}
function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) {
const config = {
allowHTML: true,
maxWidth: 500,
delay: 100,
arrow: false,
appendTo: function(el) {
return el.parentElement;
},
interactive: true,
interactiveBorder: 10,
theme: 'quarto',
placement: 'bottom-start',
};
if (contentFn) {
config.content = contentFn;
}
if (onTriggerFn) {
config.onTrigger = onTriggerFn;
}
if (onUntriggerFn) {
config.onUntrigger = onUntriggerFn;
}
window.tippy(el, config);
}
const noterefs = window.document.querySelectorAll('a[role="doc-noteref"]');
for (var i=0; i<noterefs.length; i++) {
const ref = noterefs[i];
tippyHover(ref, function() {
// use id or data attribute instead here
let href = ref.getAttribute('data-footnote-href') || ref.getAttribute('href');
try { href = new URL(href).hash; } catch {}
const id = href.replace(/^#\/?/, "");
const note = window.document.getElementById(id);
if (note) {
return note.innerHTML;
} else {
return "";
}
});
}
const xrefs = window.document.querySelectorAll('a.quarto-xref');
const processXRef = (id, note) => {
// Strip column container classes
const stripColumnClz = (el) => {
el.classList.remove("page-full", "page-columns");
if (el.children) {
for (const child of el.children) {
stripColumnClz(child);
}
}
}
stripColumnClz(note)
if (id === null || id.startsWith('sec-')) {
// Special case sections, only their first couple elements
const container = document.createElement("div");
if (note.children && note.children.length > 2) {
container.appendChild(note.children[0].cloneNode(true));
for (let i = 1; i < note.children.length; i++) {
const child = note.children[i];
if (child.tagName === "P" && child.innerText === "") {
continue;
} else {
container.appendChild(child.cloneNode(true));
break;
}
}
if (window.Quarto?.typesetMath) {
window.Quarto.typesetMath(container);
}
return container.innerHTML
} else {
if (window.Quarto?.typesetMath) {
window.Quarto.typesetMath(note);
}
return note.innerHTML;
}
} else {
// Remove any anchor links if they are present
const anchorLink = note.querySelector('a.anchorjs-link');
if (anchorLink) {
anchorLink.remove();
}
if (window.Quarto?.typesetMath) {
window.Quarto.typesetMath(note);
}
// TODO in 1.5, we should make sure this works without a callout special case
if (note.classList.contains("callout")) {
return note.outerHTML;
} else {
return note.innerHTML;
}
}
}
for (var i=0; i<xrefs.length; i++) {
const xref = xrefs[i];
tippyHover(xref, undefined, function(instance) {
instance.disable();
let url = xref.getAttribute('href');
let hash = undefined;
if (url.startsWith('#')) {
hash = url;
} else {
try { hash = new URL(url).hash; } catch {}
}
if (hash) {
const id = hash.replace(/^#\/?/, "");
const note = window.document.getElementById(id);
if (note !== null) {
try {
const html = processXRef(id, note.cloneNode(true));
instance.setContent(html);
} finally {
instance.enable();
instance.show();
}
} else {
// See if we can fetch this
fetch(url.split('#')[0])
.then(res => res.text())
.then(html => {
const parser = new DOMParser();
const htmlDoc = parser.parseFromString(html, "text/html");
const note = htmlDoc.getElementById(id);
if (note !== null) {
const html = processXRef(id, note);
instance.setContent(html);
}
}).finally(() => {
instance.enable();
instance.show();
});
}
} else {
// See if we can fetch a full url (with no hash to target)
// This is a special case and we should probably do some content thinning / targeting
fetch(url)
.then(res => res.text())
.then(html => {
const parser = new DOMParser();
const htmlDoc = parser.parseFromString(html, "text/html");
const note = htmlDoc.querySelector('main.content');
if (note !== null) {
// This should only happen for chapter cross references
// (since there is no id in the URL)
// remove the first header
if (note.children.length > 0 && note.children[0].tagName === "HEADER") {
note.children[0].remove();
}
const html = processXRef(null, note);
instance.setContent(html);
}
}).finally(() => {
instance.enable();
instance.show();
});
}
}, function(instance) {
});
}
let selectedAnnoteEl;
const selectorForAnnotation = ( cell, annotation) => {
let cellAttr = 'data-code-cell="' + cell + '"';
let lineAttr = 'data-code-annotation="' + annotation + '"';
const selector = 'span[' + cellAttr + '][' + lineAttr + ']';
return selector;
}
const selectCodeLines = (annoteEl) => {
const doc = window.document;
const targetCell = annoteEl.getAttribute("data-target-cell");
const targetAnnotation = annoteEl.getAttribute("data-target-annotation");
const annoteSpan = window.document.querySelector(selectorForAnnotation(targetCell, targetAnnotation));
const lines = annoteSpan.getAttribute("data-code-lines").split(",");
const lineIds = lines.map((line) => {
return targetCell + "-" + line;
})
let top = null;
let height = null;
let parent = null;
if (lineIds.length > 0) {
//compute the position of the single el (top and bottom and make a div)
const el = window.document.getElementById(lineIds[0]);
top = el.offsetTop;
height = el.offsetHeight;
parent = el.parentElement.parentElement;
if (lineIds.length > 1) {
const lastEl = window.document.getElementById(lineIds[lineIds.length - 1]);
const bottom = lastEl.offsetTop + lastEl.offsetHeight;
height = bottom - top;
}
if (top !== null && height !== null && parent !== null) {
// cook up a div (if necessary) and position it
let div = window.document.getElementById("code-annotation-line-highlight");
if (div === null) {
div = window.document.createElement("div");
div.setAttribute("id", "code-annotation-line-highlight");
div.style.position = 'absolute';
parent.appendChild(div);
}
div.style.top = top - 2 + "px";
div.style.height = height + 4 + "px";
div.style.left = 0;
let gutterDiv = window.document.getElementById("code-annotation-line-highlight-gutter");
if (gutterDiv === null) {
gutterDiv = window.document.createElement("div");
gutterDiv.setAttribute("id", "code-annotation-line-highlight-gutter");
gutterDiv.style.position = 'absolute';
const codeCell = window.document.getElementById(targetCell);
const gutter = codeCell.querySelector('.code-annotation-gutter');
gutter.appendChild(gutterDiv);
}
gutterDiv.style.top = top - 2 + "px";
gutterDiv.style.height = height + 4 + "px";
}
selectedAnnoteEl = annoteEl;
}
};
const unselectCodeLines = () => {
const elementsIds = ["code-annotation-line-highlight", "code-annotation-line-highlight-gutter"];
elementsIds.forEach((elId) => {
const div = window.document.getElementById(elId);
if (div) {
div.remove();
}
});
selectedAnnoteEl = undefined;
};
// Handle positioning of the toggle
window.addEventListener(
"resize",
throttle(() => {
elRect = undefined;
if (selectedAnnoteEl) {
selectCodeLines(selectedAnnoteEl);
}
}, 10)
);
function throttle(fn, ms) {
let throttle = false;
let timer;
return (...args) => {
if(!throttle) { // first call gets through
fn.apply(this, args);
throttle = true;
} else { // all the others get throttled
if(timer) clearTimeout(timer); // cancel #2
timer = setTimeout(() => {
fn.apply(this, args);
timer = throttle = false;
}, ms);
}
};
}
// Attach click handler to the DT
const annoteDls = window.document.querySelectorAll('dt[data-target-cell]');
for (const annoteDlNode of annoteDls) {