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E-MTAB-6938.sdrf.txt
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E-MTAB-6938.sdrf.txt
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Source Name Comment[ENA_SAMPLE] Comment[BioSD_SAMPLE] Characteristics[organism] Characteristics[growth condition] Characteristics[genotype] Characteristics[phenotype] Characteristics[protocol] Characteristics[fraction] Material Type Description Protocol REF Performer Protocol REF Performer Protocol REF Performer Protocol REF Performer Extract Name Comment[LIBRARY_LAYOUT] Comment[LIBRARY_SELECTION] Comment[LIBRARY_SOURCE] Comment[LIBRARY_STRAND] Comment[LIBRARY_STRATEGY] Protocol REF Performer Assay Name Technology Type Comment[ENA_EXPERIMENT] Scan Name Comment[SUBMITTED_FILE_NAME] Comment[ENA_RUN] Comment[FASTQ_URI] Factor Value[compound] Factor Value[dose] Unit[dose unit] Factor Value[fraction]
S1_eEF3_normal_rep1 ERS2573591 SAMEA4753492 Saccharomyces cerevisiae synthetic drop-out medium MET25-eEF3 eEF3 depletion driven by methionine repressible MET25 promoter Ribo-Seq Ribosome protected fragments 25-34nt whole organism rRNA-depleted ribosome protected fragments (RPF) P-MTAB-76110 Villu Kasari P-MTAB-76109 Villu Kasari P-MTAB-76111 Villu Kasari P-MTAB-76112 Villu Kasari S1_eEF3_normal_rep1 SINGLE other TRANSCRIPTOMIC first strand OTHER P-MTAB-76113 Estonian Genome Center Core Facility S1_eEF3_normal_rep1 sequencing assay ERX2676640 new_all_S1.fastq.gz new_all_S1.fastq.gz ERR2660262 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/002/ERR2660262/ERR2660262.fastq.gz none Ribosome protected fragments 25-34nt
S3_eEF3_normal_rep2 ERS2573592 SAMEA4753493 Saccharomyces cerevisiae synthetic drop-out medium MET25-eEF3 eEF3 depletion driven by methionine repressible MET25 promoter Ribo-Seq Ribosome protected fragments 25-34nt whole organism rRNA-depleted ribosome protected fragments (RPF) P-MTAB-76110 Villu Kasari P-MTAB-76109 Villu Kasari P-MTAB-76111 Villu Kasari P-MTAB-76112 Villu Kasari S3_eEF3_normal_rep2 SINGLE other TRANSCRIPTOMIC first strand OTHER P-MTAB-76113 Estonian Genome Center Core Facility S3_eEF3_normal_rep2 sequencing assay ERX2676641 new_all_S3.fastq.gz new_all_S3.fastq.gz ERR2660263 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/003/ERR2660263/ERR2660263.fastq.gz none Ribosome protected fragments 25-34nt
S5_eEF3_normal_rep1 ERS2573594 SAMEA4753495 Saccharomyces cerevisiae synthetic drop-out medium MET25-eEF3 eEF3 depletion driven by methionine repressible MET25 promoter RNA-Seq rRNA-depleted total RNA whole organism rRNA-depleted total RNA P-MTAB-76110 Villu Kasari P-MTAB-76109 Villu Kasari P-MTAB-76111 Villu Kasari P-MTAB-76112 Villu Kasari S5_eEF3_normal_rep1 SINGLE other TRANSCRIPTOMIC first strand RNA-Seq P-MTAB-76113 Estonian Genome Center Core Facility S5_eEF3_normal_rep1 sequencing assay ERX2676642 new_all_S5.fastq.gz new_all_S5.fastq.gz ERR2660264 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/004/ERR2660264/ERR2660264.fastq.gz none rRNA-depleted total RNA
S7_eEF3_normal_rep2 ERS2573595 SAMEA4753496 Saccharomyces cerevisiae synthetic drop-out medium MET25-eEF3 eEF3 depletion driven by methionine repressible MET25 promoter RNA-Seq rRNA-depleted total RNA whole organism rRNA-depleted total RNA P-MTAB-76110 Villu Kasari P-MTAB-76109 Villu Kasari P-MTAB-76111 Villu Kasari P-MTAB-76112 Villu Kasari S7_eEF3_normal_rep2 SINGLE other TRANSCRIPTOMIC first strand RNA-Seq P-MTAB-76113 Estonian Genome Center Core Facility S7_eEF3_normal_rep2 sequencing assay ERX2676643 new_all_S7.fastq.gz new_all_S7.fastq.gz ERR2660265 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/005/ERR2660265/ERR2660265.fastq.gz none rRNA-depleted total RNA
S2_eEF3_depleted_rep1 ERS2573597 SAMEA4753498 Saccharomyces cerevisiae synthetic drop-out medium MET25-eEF3 eEF3 depletion driven by methionine repressible MET25 promoter Ribo-Seq Ribosome protected fragments 25-34nt whole organism rRNA-depleted ribosome protected fragments (RPF) P-MTAB-76110 Villu Kasari P-MTAB-76109 Villu Kasari P-MTAB-76111 Villu Kasari P-MTAB-76112 Villu Kasari S2_eEF3_depleted_rep1 SINGLE other TRANSCRIPTOMIC first strand OTHER P-MTAB-76113 Estonian Genome Center Core Facility S2_eEF3_depleted_rep1 sequencing assay ERX2676644 new_all_S2.fastq.gz new_all_S2.fastq.gz ERR2660266 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/006/ERR2660266/ERR2660266.fastq.gz methionine 0.5 millimolar Ribosome protected fragments 25-34nt
S4_eEF3_depleted_rep2 ERS2573599 SAMEA4753500 Saccharomyces cerevisiae synthetic drop-out medium MET25-eEF3 eEF3 depletion driven by methionine repressible MET25 promoter Ribo-Seq Ribosome protected fragments 25-34nt whole organism rRNA-depleted ribosome protected fragments (RPF) P-MTAB-76110 Villu Kasari P-MTAB-76109 Villu Kasari P-MTAB-76111 Villu Kasari P-MTAB-76112 Villu Kasari S4_eEF3_depleted_rep2 SINGLE other TRANSCRIPTOMIC first strand OTHER P-MTAB-76113 Estonian Genome Center Core Facility S4_eEF3_depleted_rep2 sequencing assay ERX2676645 new_all_S4.fastq.gz new_all_S4.fastq.gz ERR2660267 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/007/ERR2660267/ERR2660267.fastq.gz methionine 0.5 millimolar Ribosome protected fragments 25-34nt
S6_eEF3_depleted_rep1 ERS2573602 SAMEA4753503 Saccharomyces cerevisiae synthetic drop-out medium MET25-eEF3 eEF3 depletion driven by methionine repressible MET25 promoter RNA-Seq rRNA-depleted total RNA whole organism rRNA-depleted total RNA P-MTAB-76110 Villu Kasari P-MTAB-76109 Villu Kasari P-MTAB-76111 Villu Kasari P-MTAB-76112 Villu Kasari S6_eEF3_depleted_rep1 SINGLE other TRANSCRIPTOMIC first strand RNA-Seq P-MTAB-76113 Estonian Genome Center Core Facility S6_eEF3_depleted_rep1 sequencing assay ERX2676646 new_all_S6.fastq.gz new_all_S6.fastq.gz ERR2660269 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/009/ERR2660269/ERR2660269.fastq.gz methionine 0.5 millimolar rRNA-depleted total RNA
S8_eEF3_depleted_rep2 ERS2573603 SAMEA4753504 Saccharomyces cerevisiae synthetic drop-out medium MET25-eEF3 eEF3 depletion driven by methionine repressible MET25 promoter RNA-Seq rRNA-depleted total RNA whole organism rRNA-depleted total RNA P-MTAB-76110 Villu Kasari P-MTAB-76109 Villu Kasari P-MTAB-76111 Villu Kasari P-MTAB-76112 Villu Kasari S8_eEF3_depleted_rep2 SINGLE other TRANSCRIPTOMIC first strand RNA-Seq P-MTAB-76113 Estonian Genome Center Core Facility S8_eEF3_depleted_rep2 sequencing assay ERX2676647 new_all_S8.fastq.gz new_all_S8.fastq.gz ERR2660271 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/001/ERR2660271/ERR2660271.fastq.gz methionine 0.5 millimolar rRNA-depleted total RNA