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E-MTAB-7763-riboseq.sdrf.txt
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E-MTAB-7763-riboseq.sdrf.txt
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Source Name Comment[ENA_SAMPLE] Comment[BioSD_SAMPLE] Characteristics[organism] Characteristics[strain] Characteristics[protocol] Characteristics[assayed molecule] Characteristics[replicate] Characteristics[genetic modification] Characteristics[growth condition] Material Type Description Protocol REF Performer Protocol REF Performer Protocol REF Performer Protocol REF Performer Extract Name Comment[LIBRARY_LAYOUT] Comment[LIBRARY_SELECTION] Comment[LIBRARY_SOURCE] Comment[LIBRARY_STRAND] Comment[LIBRARY_STRATEGY] Protocol REF Performer Assay Name Technology Type Comment[ENA_EXPERIMENT] Scan Name Comment[SUBMITTED_FILE_NAME] Comment[ENA_RUN] Comment[FASTQ_URI] Factor Value[strain]
new1_KO_20C_riboseq_S6 ERS3222609 SAMEA5417311 Saccharomyces cerevisiae BY derivative MJY1173 Ribo-Seq Ribosome protected fragments 18-33 nt 1 NEW1 deletion 20 degree of Celsius; Synthetic complete medium RNA Ribo-Seq - sequences of ribosome protected fragments (RPF) P-MTAB-83945 Villu Kasari P-MTAB-83944 Villu Kasari P-MTAB-83946 Villu Kasari P-MTAB-83947 Villu Kasari new1_KO_20C_riboseq_S6 SINGLE other TRANSCRIPTOMIC not applicable OTHER P-MTAB-83948 Estonian Genome Center Core Facility new1_KO_20C_riboseq_S6 sequencing assay ERX3245944 S6_KO_20C_riboseq_rep1.fastq.gz S6_KO_20C_riboseq_rep1.fastq.gz ERR3218426 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/006/ERR3218426/ERR3218426.fastq.gz BY derivative MJY1173
new1_KO_20C_riboseq_S8 ERS3222610 SAMEA5417312 Saccharomyces cerevisiae BY derivative MJY1173 Ribo-Seq Ribosome protected fragments 18-33 nt 2 NEW1 deletion 20 degree of Celsius; Synthetic complete medium RNA Ribo-Seq - sequences of ribosome protected fragments (RPF) P-MTAB-83945 Villu Kasari P-MTAB-83944 Villu Kasari P-MTAB-83946 Villu Kasari P-MTAB-83947 Villu Kasari new1_KO_20C_riboseq_S8 SINGLE other TRANSCRIPTOMIC not applicable OTHER P-MTAB-83948 Estonian Genome Center Core Facility new1_KO_20C_riboseq_S8 sequencing assay ERX3245945 S8_KO_20C_riboseq_rep2.fastq.gz S8_KO_20C_riboseq_rep2.fastq.gz ERR3218427 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/007/ERR3218427/ERR3218427.fastq.gz BY derivative MJY1173
new1_KO_30C_riboseq_S2 ERS3222613 SAMEA5417315 Saccharomyces cerevisiae BY derivative MJY1173 Ribo-Seq Ribosome protected fragments 18-33 nt 1 NEW1 deletion 30 degree of Celsius; Synthetic complete medium RNA Ribo-Seq - sequences of ribosome protected fragments (RPF) P-MTAB-83945 Villu Kasari P-MTAB-83944 Villu Kasari P-MTAB-83946 Villu Kasari P-MTAB-83947 Villu Kasari new1_KO_30C_riboseq_S2 SINGLE other TRANSCRIPTOMIC not applicable OTHER P-MTAB-83948 Estonian Genome Center Core Facility new1_KO_30C_riboseq_S2 sequencing assay ERX3245948 S2_KO_30C_riboseq_rep1.fastq.gz S2_KO_30C_riboseq_rep1.fastq.gz ERR3218430 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/000/ERR3218430/ERR3218430.fastq.gz BY derivative MJY1173
new1_KO_30C_riboseq_S4 ERS3222614 SAMEA5417316 Saccharomyces cerevisiae BY derivative MJY1173 Ribo-Seq Ribosome protected fragments 18-33 nt 2 NEW1 deletion 30 degree of Celsius; Synthetic complete medium RNA Ribo-Seq - sequences of ribosome protected fragments (RPF) P-MTAB-83945 Villu Kasari P-MTAB-83944 Villu Kasari P-MTAB-83946 Villu Kasari P-MTAB-83947 Villu Kasari new1_KO_30C_riboseq_S4 SINGLE other TRANSCRIPTOMIC not applicable OTHER P-MTAB-83948 Estonian Genome Center Core Facility new1_KO_30C_riboseq_S4 sequencing assay ERX3245949 S4_KO_30C_riboseq_rep2.fastq.gz S4_KO_30C_riboseq_rep2.fastq.gz ERR3218431 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/001/ERR3218431/ERR3218431.fastq.gz BY derivative MJY1173
WT_20C_riboseq_S5 ERS3222617 SAMEA5417319 Saccharomyces cerevisiae BY derivative MJY1171 Ribo-Seq Ribosome protected fragments 18-33 nt 1 wild type 20 degree of Celsius; Synthetic complete medium RNA Ribo-Seq - sequences of ribosome protected fragments (RPF) P-MTAB-83945 Villu Kasari P-MTAB-83944 Villu Kasari P-MTAB-83946 Villu Kasari P-MTAB-83947 Villu Kasari WT_20C_riboseq_S5 SINGLE other TRANSCRIPTOMIC not applicable OTHER P-MTAB-83948 Estonian Genome Center Core Facility WT_20C_riboseq_S5 sequencing assay ERX3245952 S5_WT_20C_riboseq_rep1.fastq.gz S5_WT_20C_riboseq_rep1.fastq.gz ERR3218434 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/004/ERR3218434/ERR3218434.fastq.gz BY derivative MJY1171
WT_20C_riboseq_S7 ERS3222618 SAMEA5417320 Saccharomyces cerevisiae BY derivative MJY1171 Ribo-Seq Ribosome protected fragments 18-33 nt 2 wild type 20 degree of Celsius; Synthetic complete medium RNA Ribo-Seq - sequences of ribosome protected fragments (RPF) P-MTAB-83945 Villu Kasari P-MTAB-83944 Villu Kasari P-MTAB-83946 Villu Kasari P-MTAB-83947 Villu Kasari WT_20C_riboseq_S7 SINGLE other TRANSCRIPTOMIC not applicable OTHER P-MTAB-83948 Estonian Genome Center Core Facility WT_20C_riboseq_S7 sequencing assay ERX3245953 S7_WT_20C_riboseq_rep2.fastq.gz S7_WT_20C_riboseq_rep2.fastq.gz ERR3218435 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/005/ERR3218435/ERR3218435.fastq.gz BY derivative MJY1171
WT_30C_riboseq_S1 ERS3222621 SAMEA5417323 Saccharomyces cerevisiae BY derivative MJY1171 Ribo-Seq Ribosome protected fragments 18-33 nt 1 wild type 30 degree of Celsius; Synthetic complete medium RNA Ribo-Seq - sequences of ribosome protected fragments (RPF) P-MTAB-83945 Villu Kasari P-MTAB-83944 Villu Kasari P-MTAB-83946 Villu Kasari P-MTAB-83947 Villu Kasari WT_30C_riboseq_S1 SINGLE other TRANSCRIPTOMIC not applicable OTHER P-MTAB-83948 Estonian Genome Center Core Facility WT_30C_riboseq_S1 sequencing assay ERX3245956 S1_WT_30C_riboseq_rep1.fastq.gz S1_WT_30C_riboseq_rep1.fastq.gz ERR3218438 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/008/ERR3218438/ERR3218438.fastq.gz BY derivative MJY1171
WT_30C_riboseq_S3 ERS3222622 SAMEA5417324 Saccharomyces cerevisiae BY derivative MJY1171 Ribo-Seq Ribosome protected fragments 18-33 nt 2 wild type 30 degree of Celsius; Synthetic complete medium RNA Ribo-Seq - sequences of ribosome protected fragments (RPF) P-MTAB-83945 Villu Kasari P-MTAB-83944 Villu Kasari P-MTAB-83946 Villu Kasari P-MTAB-83947 Villu Kasari WT_30C_riboseq_S3 SINGLE other TRANSCRIPTOMIC not applicable OTHER P-MTAB-83948 Estonian Genome Center Core Facility WT_30C_riboseq_S3 sequencing assay ERX3245957 S3_WT_30C_riboseq_rep2.fastq.gz S3_WT_30C_riboseq_rep2.fastq.gz ERR3218439 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/009/ERR3218439/ERR3218439.fastq.gz BY derivative MJY1171