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Add multiple groups per "patient" #1

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votti opened this issue May 3, 2024 · 1 comment
Open

Add multiple groups per "patient" #1

votti opened this issue May 3, 2024 · 1 comment

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@votti
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votti commented May 3, 2024

For Crispr off target effects we need to do the variant calling for each sample to the parental cell line. I would propose to encode this in the units:

patient_id = parental cell line
sample = normal (=reference) or other sample name

@votti votti changed the title Add multiple groups per Add multiple groups per "patient" May 3, 2024
@votti
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votti commented May 3, 2024

Looking more into this: maybe it will be better to use https://nf-co.re/sarek/3.4.0 to begin with

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