From 62909aeb2b5ab1c5464fa4f473ae705ed0f8fb46 Mon Sep 17 00:00:00 2001 From: Clare72 Date: Mon, 21 Oct 2024 11:55:08 +0100 Subject: [PATCH] switch dc elements to terms --- src/ontology/dpo-edit.owl | 31 +++++++++++++++---------------- 1 file changed, 15 insertions(+), 16 deletions(-) diff --git a/src/ontology/dpo-edit.owl b/src/ontology/dpo-edit.owl index 3a84455..0c43562 100644 --- a/src/ontology/dpo-edit.owl +++ b/src/ontology/dpo-edit.owl @@ -1,5 +1,4 @@ Prefix(:=) -Prefix(dc:=) Prefix(obo:=) Prefix(owl:=) Prefix(rdf:=) @@ -18,13 +17,13 @@ Import() Import() Annotation( "http://dx.doi.org/10.1186/2041-1480-4-30") Annotation(obo:IAO_0000700 obo:FBcv_0000347) -Annotation(dc:creator "http://orcid.org/0000-0002-1373-1705") -Annotation(dc:creator "http://orcid.org/0000-0002-7073-9172") -Annotation(dc:creator "https://orcid.org/0000-0001-5948-3092") -Annotation(dc:creator "https://orcid.org/0000-0002-0027-0858") -Annotation(dc:description "An ontology for the description of Drosophila melanogaster phenotypes.") -Annotation(dc:title "Drosophila Phenotype Ontology (DPO)") +Annotation(dcterms:creator "http://orcid.org/0000-0002-1373-1705") +Annotation(dcterms:creator "http://orcid.org/0000-0002-7073-9172") +Annotation(dcterms:creator "https://orcid.org/0000-0001-5948-3092") +Annotation(dcterms:creator "https://orcid.org/0000-0002-0027-0858") +Annotation(dcterms:description "An ontology for the description of Drosophila melanogaster phenotypes.") Annotation(dcterms:license "https://creativecommons.org/licenses/by/4.0/") +Annotation(dcterms:title "Drosophila Phenotype Ontology (DPO)") Annotation(oboInOwl:default-namespace "FlyBase miscellaneous CV") Declaration(Class(obo:FBbt_00000001)) @@ -332,13 +331,13 @@ Declaration(AnnotationProperty(fbcv:lethal_phase)) Declaration(AnnotationProperty(fbcv:relational_slim)) Declaration(AnnotationProperty(fbcv:systematic_synonym)) Declaration(AnnotationProperty(fbcv:value_slim)) -Declaration(AnnotationProperty(dc:creator)) -Declaration(AnnotationProperty(dc:description)) -Declaration(AnnotationProperty(dc:source)) -Declaration(AnnotationProperty(dc:title)) Declaration(AnnotationProperty(dcterms:contributor)) +Declaration(AnnotationProperty(dcterms:creator)) Declaration(AnnotationProperty(dcterms:date)) +Declaration(AnnotationProperty(dcterms:description)) Declaration(AnnotationProperty(dcterms:license)) +Declaration(AnnotationProperty(dcterms:source)) +Declaration(AnnotationProperty(dcterms:title)) Declaration(AnnotationProperty(oboInOwl:SubsetProperty)) Declaration(AnnotationProperty(oboInOwl:SynonymTypeProperty)) Declaration(AnnotationProperty(oboInOwl:auto-generated-by)) @@ -681,7 +680,7 @@ SubClassOf(obo:FBcv_0000350 obo:FBcv_0001347) # Class: obo:FBcv_0000351 (lethal) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:KM") Annotation(oboInOwl:hasDbXref "FBC:DOS") obo:IAO_0000115 obo:FBcv_0000351 "A phenotype of a population that is the death of all animals in that population at some stage or stages prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:DOS") Annotation(oboInOwl:hasDbXref "FBC:KM") obo:IAO_0000115 obo:FBcv_0000351 "A phenotype of a population that is the death of all animals in that population at some stage or stages prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).") AnnotationAssertion(oboInOwl:hasOBONamespace obo:FBcv_0000351 "phenotypic_class") AnnotationAssertion(oboInOwl:id obo:FBcv_0000351 "FBcv:0000351") AnnotationAssertion(oboInOwl:inSubset obo:FBcv_0000351 fbcv:lethal_phase) @@ -692,7 +691,7 @@ SubClassOf(obo:FBcv_0000351 obo:FBcv_0001347) # Class: obo:FBcv_0000352 (partially lethal - majority die) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:KM") Annotation(oboInOwl:hasDbXref "FBC:NB") Annotation(oboInOwl:hasDbXref "FBC:DOS") obo:IAO_0000115 obo:FBcv_0000352 "A phenotype of a population that is the death of a majority of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:DOS") Annotation(oboInOwl:hasDbXref "FBC:KM") Annotation(oboInOwl:hasDbXref "FBC:NB") obo:IAO_0000115 obo:FBcv_0000352 "A phenotype of a population that is the death of a majority of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).") AnnotationAssertion(oboInOwl:hasExactSynonym obo:FBcv_0000352 "semi-lethal") AnnotationAssertion(oboInOwl:hasOBONamespace obo:FBcv_0000352 "phenotypic_class") AnnotationAssertion(oboInOwl:id obo:FBcv_0000352 "FBcv:0000352") @@ -1356,8 +1355,8 @@ SubClassOf(obo:FBcv_0000420 obo:FBcv_0001347) # Class: obo:FBcv_0000421 (abnormal touch response) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FlyBase:FBrf0073546") obo:IAO_0000115 obo:FBcv_0000421 "Phenotype that is any abnormality in or loss of a stereotypical behavioral response to touch.") -AnnotationAssertion(oboInOwl:hasExactSynonym obo:FBcv_0000421 "touch sensitivity defective") AnnotationAssertion(oboInOwl:hasExactSynonym obo:FBcv_0000421 "touch response defective") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:FBcv_0000421 "touch sensitivity defective") AnnotationAssertion(oboInOwl:hasOBONamespace obo:FBcv_0000421 "phenotypic_class") AnnotationAssertion(oboInOwl:id obo:FBcv_0000421 "FBcv:0000421") AnnotationAssertion(rdfs:comment obo:FBcv_0000421 "This phenotype is commonly assayed by scoring larval avoidance responses following stroking of the thoracic segments (see Kernan et al., 1994). On its own, this is not sufficient evidence for an abnormality in sensory perception of touch, as motor defects can also cause this phenotype.") @@ -2221,7 +2220,7 @@ SubClassOf(obo:FBcv_0002014 obo:FBcv_0001347) # Class: obo:FBcv_0002015 (partially lethal) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:KM") Annotation(oboInOwl:hasDbXref "FBC:DOS") obo:IAO_0000115 obo:FBcv_0002015 "A phenotype of a population that is the death of some significant proportion of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:DOS") Annotation(oboInOwl:hasDbXref "FBC:KM") obo:IAO_0000115 obo:FBcv_0002015 "A phenotype of a population that is the death of some significant proportion of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).") AnnotationAssertion(oboInOwl:hasOBONamespace obo:FBcv_0002015 "phenotypic_class") AnnotationAssertion(oboInOwl:id obo:FBcv_0002015 "FBcv:0002015") AnnotationAssertion(oboInOwl:inSubset obo:FBcv_0002015 fbcv:lethal_phase) @@ -3154,4 +3153,4 @@ SubClassOf(obo:FBcv_0007555 obo:FBcv_0001347) AnnotationAssertion(rdfs:label oboInOwl:Subset "subset_oio") -) +) \ No newline at end of file