diff --git a/.github/workflows/check-bioc-devel.yml b/.github/workflows/check-bioc-devel.yml
index 039eab4..467f45c 100644
--- a/.github/workflows/check-bioc-devel.yml
+++ b/.github/workflows/check-bioc-devel.yml
@@ -194,13 +194,13 @@ jobs:
shell: Rscript {0}
- name: Install covr
- if: github.ref == 'refs/heads/master' && env.run_covr == 'true' && runner.os == 'Linux'
+ if: github.ref == 'refs/heads/devel' && env.run_covr == 'true' && runner.os == 'Linux'
run: |
remotes::install_cran("covr")
shell: Rscript {0}
- name: Install pkgdown
- if: github.ref == 'refs/heads/master' && env.run_pkgdown == 'true' && runner.os == 'Linux'
+ if: github.ref == 'refs/heads/devel' && env.run_pkgdown == 'true' && runner.os == 'Linux'
run: |
remotes::install_cran("pkgdown")
shell: Rscript {0}
@@ -251,17 +251,17 @@ jobs:
shell: Rscript {0}
- name: Test coverage
- if: github.ref == 'refs/heads/master' && env.run_covr == 'true' && runner.os == 'Linux'
+ if: github.ref == 'refs/heads/devel' && env.run_covr == 'true' && runner.os == 'Linux'
run: |
covr::codecov(coverage = covr::package_coverage(type = "all"))
shell: Rscript {0}
- name: Install package
- if: github.ref == 'refs/heads/master' && env.run_pkgdown == 'true' && runner.os == 'Linux'
+ if: github.ref == 'refs/heads/devel' && env.run_pkgdown == 'true' && runner.os == 'Linux'
run: R CMD INSTALL .
- name: Build pkgdown site
- if: github.ref == 'refs/heads/master' && env.run_pkgdown == 'true' && runner.os == 'Linux'
+ if: github.ref == 'refs/heads/devel' && env.run_pkgdown == 'true' && runner.os == 'Linux'
run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
shell: Rscript {0}
## Note that you need to run pkgdown::deploy_to_branch(new_process = FALSE)
@@ -270,12 +270,12 @@ jobs:
## makes the git history recognizable by pkgdown.
- name: Install deploy dependencies
- if: github.ref == 'refs/heads/master' && env.run_pkgdown == 'true' && runner.os == 'Linux'
+ if: github.ref == 'refs/heads/devel' && env.run_pkgdown == 'true' && runner.os == 'Linux'
run: |
apt-get update && apt-get -y install rsync
- name: Deploy pkgdown site to GitHub pages 🚀
- if: github.ref == 'refs/heads/master' && env.run_pkgdown == 'true' && runner.os == 'Linux'
+ if: github.ref == 'refs/heads/devel' && env.run_pkgdown == 'true' && runner.os == 'Linux'
uses: JamesIves/github-pages-deploy-action@releases/v4
with:
clean: false
diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml
index bcaed30..8ae7e01 100644
--- a/.github/workflows/check-bioc.yml
+++ b/.github/workflows/check-bioc.yml
@@ -36,7 +36,7 @@ name: R-CMD-check-bioc
env:
has_testthat: 'true'
run_covr: 'true'
- run_pkgdown: 'true'
+ run_pkgdown: 'false'
has_RUnit: 'false'
cache-version: 'cache-v1'
run_docker: 'false'
@@ -194,13 +194,13 @@ jobs:
shell: Rscript {0}
- name: Install covr
- if: github.ref == 'refs/heads/master' && env.run_covr == 'true' && runner.os == 'Linux'
+ if: github.ref == 'refs/heads/devel' && env.run_covr == 'true' && runner.os == 'Linux'
run: |
remotes::install_cran("covr")
shell: Rscript {0}
- name: Install pkgdown
- if: github.ref == 'refs/heads/master' && env.run_pkgdown == 'true' && runner.os == 'Linux'
+ if: github.ref == 'refs/heads/devel' && env.run_pkgdown == 'true' && runner.os == 'Linux'
run: |
remotes::install_cran("pkgdown")
shell: Rscript {0}
@@ -251,17 +251,17 @@ jobs:
shell: Rscript {0}
- name: Test coverage
- if: github.ref == 'refs/heads/master' && env.run_covr == 'true' && runner.os == 'Linux'
+ if: github.ref == 'refs/heads/devel' && env.run_covr == 'true' && runner.os == 'Linux'
run: |
covr::codecov(coverage = covr::package_coverage(type = "all"))
shell: Rscript {0}
- name: Install package
- if: github.ref == 'refs/heads/master' && env.run_pkgdown == 'true' && runner.os == 'Linux'
+ if: github.ref == 'refs/heads/devel' && env.run_pkgdown == 'true' && runner.os == 'Linux'
run: R CMD INSTALL .
- name: Build pkgdown site
- if: github.ref == 'refs/heads/master' && env.run_pkgdown == 'true' && runner.os == 'Linux'
+ if: github.ref == 'refs/heads/devel' && env.run_pkgdown == 'true' && runner.os == 'Linux'
run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
shell: Rscript {0}
## Note that you need to run pkgdown::deploy_to_branch(new_process = FALSE)
@@ -270,12 +270,12 @@ jobs:
## makes the git history recognizable by pkgdown.
- name: Install deploy dependencies
- if: github.ref == 'refs/heads/master' && env.run_pkgdown == 'true' && runner.os == 'Linux'
+ if: github.ref == 'refs/heads/devel' && env.run_pkgdown == 'true' && runner.os == 'Linux'
run: |
apt-get update && apt-get -y install rsync
- name: Deploy pkgdown site to GitHub pages 🚀
- if: github.ref == 'refs/heads/master' && env.run_pkgdown == 'true' && runner.os == 'Linux'
+ if: github.ref == 'refs/heads/devel' && env.run_pkgdown == 'true' && runner.os == 'Linux'
uses: JamesIves/github-pages-deploy-action@releases/v4
with:
clean: false
diff --git a/README.md b/README.md
index bb7532d..5c1adee 100644
--- a/README.md
+++ b/README.md
@@ -1,9 +1,9 @@
-# EpiTxDb
+# EpiTxDb
[![R-CMD-check](https://github.com/FelixErnst/EpiTxDb/workflows/R-CMD-check-bioc-devel/badge.svg)](https://github.com/FelixErnst/EpiTxDb/actions/)
[![BioC Build](https://bioconductor.org/shields/build/devel/bioc/EpiTxDb.svg)](http://bioconductor.org/checkResults/devel/bioc-LATEST/EpiTxDb/)
-[![codecov](https://codecov.io/gh/FelixErnst/EpiTxDb/branch/master/graph/badge.svg)](https://codecov.io/gh/FelixErnst/EpiTxDb)
+[![codecov](https://codecov.io/gh/FelixErnst/EpiTxDb/branch/devel/graph/badge.svg)](https://codecov.io/gh/FelixErnst/EpiTxDb)
[![BioC Years](https://bioconductor.org/shields/years-in-bioc/EpiTxDb.svg)](https://doi.org/doi:10.18129/B9.bioc.EpiTxDb)